RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA645397" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA645397 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1159151 1159151 PRJNA645397_S_NODE_1481_length_165_cov_0.896552_g1479_i0 PRJNA645397 1481 165 0.896552 1.4793108 Deinococcus 1298 Bacteria Bacteria 230 5.939999999999998e-56   NTclustered gi|2706841266|gb|CP149784.1| 3112952 g1479 i0 97.059 29.430303030303 136 4 82 0 30 165 41018 40883 Deinococcus sp. VB142 plasmid p1, complete sequence blastn 4856 230 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
17197561 17197561 PRJNA645397_P_NODE_10454_length_164_cov_0.904348_g10381_i0 PRJNA645397 10454 164 0.904348 1.48313072 Deinococcus yunweiensis 367282 Bacteria Bacteria 167 4.689999999999999e-37   NTclustered gi|2890653062|gb|CP177252.1| 367282 g10381 i0 85.276 1.99390243902439 163 22 99 2 2 163 3112666 3112827 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 327 167 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
21022001 21022001 PRJNA645397_P_NODE_10977_length_162_cov_0.920354_g10904_i0 PRJNA645397 10977 162 0.920354 1.49097348 Thermus sp. NEB1569 2918899 Bacteria Bacteria 289 9.44e-74   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g10904 i0 98.765 59.5308641975309 162 2 100 0 1 162 503178 503017 Thermus sp. NEB1569 chromosome, complete genome blastn 9644 289 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;