RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA643700" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9546778 9546778 PRJNA643700_P_NODE_338368_length_191_cov_1.098592_g336812_i0 PRJNA643700 338368 191 1.098592 2.09831072 Desulfobacterales bacterium 2044940 Bacteria Bacteria 58.4 3.53e-4   NTclustered gi|2621717821|emb|OY776218.1| 2044940 g336812 i0 97.143 0.183246073298429 35 0 18 1 117 150 1777044 1777078 MAG: Desulfobacterales bacterium isolate b599e3c4-2ca3-45e6-bc7f-bb04c01707dc genome assembly, chromosome: 1 blastn 35 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
22295156 22295156 PRJNA643700_P_NODE_179798_length_298_cov_1.574297_g178242_i0 PRJNA643700 179798 298 1.574297 4.69140506 Smithellaceae bacterium 2964540 Bacteria Bacteria 52.8 0.028   NTclustered gi|2626214512|emb|OY820932.1| 2964540 g178242 i0 100 0.0939597315436242 28 0 9 0 21 48 1790373 1790346 MAG: Smithellaceae bacterium isolate 90efb5c7-b315-4df1-98b9-9b59cc098579 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;