RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA643700" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3168885 3168885 PRJNA643700_P_NODE_179023_length_299_cov_1.248000_g177467_i0 PRJNA643700 179023 299 1.248 3.73152 Archangium gephyra 48 Bacteria Bacteria 510 3.82e-140   NTclustered gi|827418478|gb|CP011509.1| 48 g177467 i0 97.643 220.060200668896 297 7 99 0 1 297 1063510 1063214 Archangium gephyra strain DSM 2261, complete genome blastn 65798 510 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
8811569 8811569 PRJNA643700_P_NODE_299947_length_210_cov_1.012422_g298391_i0 PRJNA643700 299947 210 1.012422 2.1260862 Archangiaceae 39 Bacteria Bacteria 388 1.24e-103   NTclustered gi|2579665545|gb|CP043492.1| 43 g298391 i0 100 246.485714285714 210 0 100 0 1 210 453344 453135 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 51762 388 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
9546865 9546865 PRJNA643700_P_NODE_401168_length_166_cov_1.777778_g399612_i0 PRJNA643700 401168 166 1.777778 2.95111148 Archangium gephyra 48 Bacteria Bacteria 296 5.82e-76   NTclustered gi|2809295724|gb|CP102578.1| 48 g399612 i0 98.795 271.180722891566 166 2 100 0 1 166 336520 336355 Archangium gephyra strain SDU49 chromosome, complete genome blastn 45016 296 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;