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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA643700" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 6 ✖

bioproject 1

  • PRJNA643700 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4445957 4445957 PRJNA643700_P_NODE_408904_length_165_cov_0.896552_g407348_i0 PRJNA643700 408904 165 0.896552 1.4793108 Methanobrevibacter olleyae 294671 Archaea Archaea 58.4 2.97e-4   NTclustered gi|998157363|gb|CP014265.1| 294671 g407348 i0 100 0.187878787878788 31 0 19 0 65 95 382332 382362 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 31 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
6996658 6996658 PRJNA643700_P_NODE_203606_length_275_cov_1.840708_g202050_i0 PRJNA643700 203606 275 1.840708 5.061947 Methanobrevibacter arboriphilus 39441 Archaea Archaea 54.7 0.007   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g202050 i0 100 0.105454545454545 29 0 11 0 62 90 2275136 2275108 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
6996874 6996874 PRJNA643700_P_NODE_413126_length_164_cov_1.191304_g411570_i0 PRJNA643700 413126 164 1.191304 1.95373856 Methanocaldococcus fervens 83171 Archaea Archaea 52.8 0.014   NTclustered gi|256793173|gb|CP001696.1| 573064 g411570 i0 100 0.170731707317073 28 0 17 0 92 119 1360328 1360355 Methanocaldococcus fervens AG86, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens
10822495 10822495 PRJNA643700_P_NODE_400689_length_166_cov_2.487179_g399133_i0 PRJNA643700 400689 166 2.487179 4.12871714 Methanobacterium sp. BAmetb5 2025351 Archaea Archaea 52.8 0.014   NTclustered gi|1473089901|gb|CP022706.1| 2025351 g399133 i0 100 0.168674698795181 28 0 17 0 109 136 770463 770436 MAG: Methanobacterium sp. BAmetb5 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BAmetb5
16461412 16461412 PRJNA643700_P_NODE_248233_length_241_cov_1.078125_g246677_i0 PRJNA643700 248233 241 1.078125 2.59828125 Halalkalicoccus 332246 Archaea Archaea 351 1.91e-92   NTclustered gi|507148368|ref|NR_103171.1| 413810 g246677 i0 92.946 108.336099585062 241 17 100 0 1 241 1440 1680 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 26109 351 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
19744901 19744901 PRJNA643700_P_NODE_118276_length_381_cov_1.825301_g116721_i0 PRJNA643700 118276 381 1.825301 6.95439681 uncultured Thermoplasmata archaeon 376542 Archaea Archaea 52.8 0.036   NTclustered gi|2874253895|emb|OY970070.1| 376542 g116721 i0 100 0.073490813648294 28 0 7 0 338 365 1484957 1484930 MAG: uncultured Thermoplasmata archaeon isolate MFD04408.bin.c.5 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       uncultured Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;