RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA643700" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23570920 23570920 PRJNA643700_P_NODE_360959_length_180_cov_1.587786_g359403_i0 PRJNA643700 360959 180 1.587786 2.8580148 Candidatus Woesebacteria bacterium GW2011_GWF1_31_35 1618600 Bacteria Bacteria 58.4 3.28e-4   NTclustered gi|837352775|gb|CP011214.1| 1618600 g359403 i0 100 0.172222222222222 31 0 17 0 63 93 200116 200086 MAG: Candidatus Woesebacteria bacterium GW2011_GWF1_31_35 chromosome, complete genome blastn 31 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Woeseibacteriota         Candidatus Woesebacteria bacterium GW2011_GWF1_31_35
24844376 24844376 PRJNA643700_P_NODE_12340_length_1020_cov_2.414006_g11562_i0 PRJNA643700 12340 1020 2.414006 24.6228612 Candidatus Nealsonbacteria bacterium 2093793 Bacteria Bacteria 56.5 0.008   NTclustered gi|2901418678|gb|CP179888.1| 2093793 g11562 i0 100 0.0294117647058824 30 0 3 0 332 361 28285 28314 MAG: Candidatus Nealsonbacteria bacterium isolate ER9H13parc1 chromosome, complete genome blastn 30 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;