RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA642647 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4986900 4986900 PRJNA642647_P_NODE_2324_length_226_cov_1.566138_g2274_i0 PRJNA642647 2324 226 1.566138 3.53947188 Turneriella 338321 Bacteria Bacteria 364 2.2699999999999992e-96   NTclustered gi|470489162|ref|NR_076910.1| 29510 g2274 i0 96 514.230088495575 225 8 99 1 3 226 1058 834 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 116216 364 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
7536467 7536467 PRJNA642647_P_NODE_4486_length_171_cov_3.835821_g4436_i0 PRJNA642647 4486 171 3.835821 6.55925391 Turneriella 338321 Bacteria Bacteria 294 2.16e-75   NTclustered gi|470489162|ref|NR_076910.1| 29510 g4436 i0 98.225 183.520467836257 169 2 98 1 3 170 2100 2268 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 31382 294 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
15920851 15920851 PRJNA642647_P_NODE_3473_length_190_cov_1.692810_g3423_i0 PRJNA642647 3473 190 1.69281 3.216339 Spirochaetota bacterium 2202144 Bacteria Bacteria 119 1.59e-22   NTclustered gi|2621703426|emb|OY760686.1| 2202144 g3423 i0 78.462 101.226315789474 195 32 100 10 1 190 1825 2014 MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 blastn 19233 119 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;