RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5721523 5721523 PRJNA642647_P_NODE_3725_length_185_cov_1.581081_g3675_i0 PRJNA642647 3725 185 1.581081 2.92499985 Minisyncoccota bacterium 2053589 Bacteria Bacteria 106 1.2e-18   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g3675 i0 89.286 37.1567567567568 84 9 45 0 52 135 444748 444665 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 6874 106 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
8811499 8811499 PRJNA642647_P_NODE_6627_length_150_cov_4.000000_g6577_i0 PRJNA642647 6627 150 4 6 Bacteria 2 Bacteria Bacteria 147 5.45e-31   NTclustered gi|2862534883|gb|CP174360.1| 1948790 g6577 i0 84.768 10.36 151 17 98 3 1 147 190677 190529 MAG: Patescibacteria group bacterium UBA2103 chromosome, complete genome blastn 1554 148 0.993243243243243 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Candidatus Phycocordibacterales Candidatus Phycocordibacteraceae Candidatus Minusculum Candidatus Minusculum obligatum
14646933 14646933 PRJNA642647_P_NODE_5952_length_156_cov_2.058824_g5902_i0 PRJNA642647 5952 156 2.058824 3.21176544 Minisyncoccota bacterium 2053589 Bacteria Bacteria 126 7.46e-25   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g5902 i0 90.625 469.807692307692 96 8 61 1 55 149 444527 444622 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 73290 126 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
21020372 21020372 PRJNA642647_P_NODE_2277_length_227_cov_3.021053_g2227_i0 PRJNA642647 2277 227 3.021053 6.85779031 Minisyncoccota bacterium 2053589 Bacteria Bacteria 252 1.86e-62   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g2227 i0 86.957 46.0352422907489 230 22 99 7 2 227 443792 443567 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 10450 252 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;