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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10822191 10822191 PRJNA642647_P_NODE_1229_length_316_cov_1.637993_g1179_i0 PRJNA642647 1229 316 1.637993 5.17605788 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 551 2.389999999999999e-152   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1179 i0 98.403 2.97784810126582 313 5 99 0 1 313 4025 3713 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 941 551 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
10822192 10822192 PRJNA642647_P_NODE_1369_length_300_cov_2.376426_g1319_i0 PRJNA642647 1369 300 2.376426 7.129278 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 366 8.77e-97   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1319 i0 93.522 28.02 247 15 82 1 4 249 4075 4321 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8406 366 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12097402 12097402 PRJNA642647_P_NODE_2470_length_220_cov_0.825137_g2420_i0 PRJNA642647 2470 220 0.825137 1.8153014 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 326 1.04e-84   NTclustered gi|38606344|gb|AY376152.1| 51634 g2420 i0 94.009 39.3727272727273 217 9 98 4 6 220 962 1176 Naegleria australiensis isolate 7857 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 8662 326 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
12637718 12637718 PRJNA642647_P_NODE_1710_length_265_cov_2.649123_g1660_i0 PRJNA642647 1710 265 2.649123 7.02017595 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 484 2.0199999999999998e-132   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g1660 i0 100 65.788679245283 262 0 99 0 4 265 281 542 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 17434 484 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
15187030 15187030 PRJNA642647_P_NODE_312_length_636_cov_4.373957_g267_i0 PRJNA642647 312 636 4.373957 27.81836652 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1153 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g267 i0 99.526 31.2405660377358 633 3 99 0 4 636 1758 2390 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19869 1153 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
17736466 17736466 PRJNA642647_P_NODE_334_length_612_cov_8.713043_g288_i0 PRJNA642647 334 612 8.713043 53.32382316 Naegleria 5761 Heterolobosea other_Eukaryota 1112 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g288 i0 99.671 50.7156862745098 608 2 99 0 4 611 2398 3005 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31038 1112 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
20284967 20284967 PRJNA642647_P_NODE_436_length_535_cov_6.068273_g387_i0 PRJNA642647 436 535 6.068273 32.465260550000004 Naegleria 5761 Heterolobosea other_Eukaryota 979 0   NTclustered gi|1434892789|gb|MH678815.1| 37103 g387 i0 100 96.0691588785047 530 0 99 0 4 533 47 576 Naegleria sp. strain 1008-fragment2 small subunit ribosomal RNA gene, partial sequence blastn 51397 979 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
21020421 21020421 PRJNA642647_P_NODE_6717_length_150_cov_1.353982_g6667_i0 PRJNA642647 6717 150 1.353982 2.030973 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 111 1.99e-20   NTclustered gi|1059971677|gb|KT892699.1| 1892890 g6667 i0 80.69 28.72 145 27 96 1 4 147 1576 1720 Heterolobosea sp. strain LPG3 18S ribosomal RNA gene, partial sequence blastn 4308 111 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
21560521 21560521 PRJNA642647_P_NODE_277_length_677_cov_11.335938_g236_i0 PRJNA642647 277 677 11.335938 76.74430026 Naegleria 5761 Heterolobosea other_Eukaryota 1229 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g236 i0 99.555 98.5258493353028 674 3 99 0 4 677 3 676 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 66702 1240 0.991129032258064 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
22836031 22836031 PRJNA642647_P_NODE_618_length_454_cov_3.028777_g569_i0 PRJNA642647 618 454 3.028777 13.75064758 Naegleria 5761 Heterolobosea other_Eukaryota 822 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g569 i0 99.557 709.037444933921 451 2 99 0 2 452 5307 4857 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 321903 828 0.992753623188406 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23570694 23570694 PRJNA642647_P_NODE_199_length_787_cov_6.817333_g167_i0 PRJNA642647 199 787 6.817333 53.65241071 Naegleria sp. 37103 Heterolobosea other_Eukaryota 1448 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g167 i0 100 27.6823379923761 784 0 99 0 4 787 3068 3851 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21786 1448 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
23570696 23570696 PRJNA642647_P_NODE_2379_length_223_cov_5.892473_g2329_i0 PRJNA642647 2379 223 5.892473 13.14021479 Naegleria sp. 37103 Heterolobosea other_Eukaryota 411 2.84e-110   NTclustered gi|2651357798|gb|PP174311.1| 37103 g2329 i0 100 25.2735426008969 222 0 99 0 1 222 3853 4074 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5636 411 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
24110431 24110431 PRJNA642647_P_NODE_1199_length_320_cov_2.356890_g1149_i0 PRJNA642647 1199 320 2.35689 7.542048 Naegleria 5761 Heterolobosea other_Eukaryota 121 8.11e-23   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1149 i0 89.474 21.7125 95 10 30 0 224 318 5057 5151 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6948 121 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;