RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3168797 3168797 PRJNA642647_P_NODE_1823_length_257_cov_3.918182_g1773_i0 PRJNA642647 1823 257 3.918182 10.06972774 Woronina pythii 1484336 SAR_Eukaryotes SAR_Eukaryotes 322 1.61e-83   NTclustered gi|1031965309|gb|KX011114.1| 1484336 g1773 i0 90.438 66.8132295719844 251 14 96 6 10 257 3732 3975 Woronina pythii isolate PD0236 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17171 322 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Woronina Woronina pythii
6262249 6262249 PRJNA642647_P_NODE_3685_length_185_cov_3.878378_g3635_i0 PRJNA642647 3685 185 3.878378 7.1749993 Leptophrys 1108493 SAR_Eukaryotes SAR_Eukaryotes 318 1.41e-82   NTclustered gi|378734997|emb|HE609036.1| 1108494 g3635 i0 97.826 88.2486486486487 184 4 99 0 1 184 323 140 Leptophrys vorax partial 18S rRNA gene, strain LV.01 blastn 16326 318 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Leptophrys Leptophrys vorax
9546606 9546606 PRJNA642647_P_NODE_6208_length_153_cov_1.974138_g6158_i0 PRJNA642647 6208 153 1.974138 3.02043114 uncultured Plasmodiophoridae 243295 SAR_Eukaryotes SAR_Eukaryotes 226 6.979999999999998e-55   NTclustered gi|607252037|gb|KF111216.1| 243295 g6158 i0 95.714 92.4052287581699 140 6 92 0 4 143 3 142 Uncultured plasmodiophorid clone PD0473 18S ribosomal RNA gene, partial sequence blastn 14138 226 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida     uncultured Plasmodiophoridae
15920868 15920868 PRJNA642647_P_NODE_6033_length_155_cov_2.576271_g5983_i0 PRJNA642647 6033 155 2.576271 3.99322005 Vampyrella pendula 1108492 SAR_Eukaryotes SAR_Eukaryotes 233 4.24e-57   NTclustered gi|378735002|emb|HE609041.1| 1108492 g5983 i0 95.27 95.5161290322581 148 6 95 1 5 152 745 891 Vampyrella pendula partial 18S rRNA gene, strain VP.02 blastn 14805 233 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae Vampyrella Vampyrella pendula

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;