RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA642647 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6996561 6996561 PRJNA642647_P_NODE_4626_length_169_cov_2.583333_g4576_i0 PRJNA642647 4626 169 2.583333 4.36583277 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 167 4.83e-37   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g4576 i0 85.03 99.0059171597633 167 22 98 3 1 165 3494880 3495045 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 16732 167 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
19744891 19744891 PRJNA642647_P_NODE_956_length_361_cov_1.629630_g906_i0 PRJNA642647 956 361 1.62963 5.8829643 Anaerolineales bacterium 2073117 Bacteria Bacteria 540 5.99e-149   NTclustered gi|2556899361|gb|CP129481.1| 2073117 g906 i0 93.872 44.1689750692521 359 21 99 1 1 359 1234113 1233756 MAG: Anaerolineales bacterium isolate cMAG.15 chromosome, complete genome blastn 15945 540 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
24844342 24844342 PRJNA642647_P_NODE_5800_length_158_cov_2.322314_g5750_i0 PRJNA642647 5800 158 2.322314 3.66925612 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 202 1.2299999999999999e-47   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g5750 i0 90.26 4.9746835443038 154 15 97 0 4 157 3495687 3495840 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 786 202 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;