RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA642647 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5721533 5721533 PRJNA642647_P_NODE_4625_length_169_cov_2.712121_g4575_i0 PRJNA642647 4625 169 2.712121 4.58348449 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 141 2.93e-29   NTclustered gi|2874253885|emb|OY970060.1| 171953 g4575 i0 98.734 76.2426035502959 79 1 73 0 1 79 4841101 4841179 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 12885 141 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
9546589 9546589 PRJNA642647_P_NODE_4468_length_172_cov_1.000000_g4418_i0 PRJNA642647 4468 172 1 1.72 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 252 1.33e-62   NTclustered gi|2874254091|emb|OY970174.1| 171953 g4418 i0 93.491 129.046511627907 169 11 98 0 1 169 4357964 4357796 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 22196 252 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10822190 10822190 PRJNA642647_P_NODE_1189_length_321_cov_5.802817_g1139_i0 PRJNA642647 1189 321 5.802817 18.62704257 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 455 1.96e-123   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g1139 i0 92.698 101.233644859813 315 23 98 0 1 315 634209 633895 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 32496 455 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
12097390 12097390 PRJNA642647_P_NODE_1190_length_321_cov_5.327465_g1140_i0 PRJNA642647 1190 321 5.327465 17.10116265 Paludibaculum fermentans 1473598 Bacteria Bacteria 449 9.14e-122   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g1140 i0 92.188 100.464174454829 320 21 99 4 4 321 4785457 4785140 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 32249 449 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
12097395 12097395 PRJNA642647_P_NODE_1930_length_249_cov_2.509434_g1880_i0 PRJNA642647 1930 249 2.509434 6.24849066 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 374 4.23e-99   NTclustered gi|76574295|gb|DQ139443.1| 171953 g1880 i0 94.262 106.056224899598 244 14 98 0 6 249 810 567 Uncultured Acidobacteria bacterium clone CAL2 23S ribosomal RNA gene, partial sequence blastn 26408 374 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14646938 14646938 PRJNA642647_P_NODE_6572_length_151_cov_1.324561_g6522_i0 PRJNA642647 6572 151 1.324561 2.00008711 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 233 4.1e-57   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g6522 i0 95.833 6.41059602649007 144 6 95 0 5 148 635088 635231 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 968 233 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
24844325 24844325 PRJNA642647_P_NODE_4280_length_175_cov_1.391304_g4230_i0 PRJNA642647 4280 175 1.391304 2.434782 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 180 6.48e-41   NTclustered gi|76574295|gb|DQ139443.1| 171953 g4230 i0 92.126 120.531428571429 127 10 73 0 33 159 151 277 Uncultured Acidobacteria bacterium clone CAL2 23S ribosomal RNA gene, partial sequence blastn 21093 180 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;