RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA642647" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA642647 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1158573 1158573 PRJNA642647_P_NODE_5721_length_159_cov_2.581967_g5671_i0 PRJNA642647 5721 159 2.581967 4.10532753 Deinococcus 1298 Bacteria Bacteria 285 1.1899999999999998e-72   NTclustered gi|1435316362|gb|CP031158.1| 980427 g5671 i0 100 160.194968553459 154 0 97 0 3 156 1792167 1792320 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 25471 285 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
19010042 19010042 PRJNA642647_P_NODE_1995_length_245_cov_3.000000_g1945_i0 PRJNA642647 1995 245 3 7.35 Thermus 270 Bacteria Bacteria 448 2.41e-121   NTclustered gi|1614035200|gb|MH827786.1| 275 g1945 i0 100 99.7795918367347 242 0 99 0 1 242 499 258 Thermus sp. strain 0615-1 16S ribosomal RNA gene, partial sequence blastn 24446 448 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
24110443 24110443 PRJNA642647_P_NODE_3599_length_187_cov_2.180000_g3549_i0 PRJNA642647 3599 187 2.18 4.0766 Deinococcus 1298 Bacteria Bacteria 327 2.3699999999999997e-85   NTclustered gi|1723741897|gb|MN319484.1| 47478 g3549 i0 98.387 99.8395721925134 186 3 99 0 1 186 282 467 Deinococcus sp. strain P161 16S ribosomal RNA gene, partial sequence blastn 18670 327 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;