RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641991 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4445432 4445432 PRJNA641991_P_NODE_4064_length_162_cov_0.902655_g4023_i0 PRJNA641991 4064 162 0.902655 1.4623011 Amphimedon queenslandica 400682 Porifera other_Eukaryota 67.6 4.81e-7   NTclustered gi|1133448046|ref|XM_003382388.3| 400682 g4023 i0 86.885 0.376543209876543 61 6 37 2 49 108 1203 1262 PREDICTED: Amphimedon queenslandica 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like (LOC100634128), mRNA blastn 61 67.6 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
6996301 6996301 PRJNA641991_P_NODE_2666_length_186_cov_1.240876_g2625_i0 PRJNA641991 2666 186 1.240876 2.30802936 Amphimedon queenslandica 400682 Porifera other_Eukaryota 126 9.24e-25   NTclustered gi|1133464558|ref|XM_019997407.1| 400682 g2625 i0 82.517 4.66129032258065 143 25 77 0 3 145 168 26 PREDICTED: Amphimedon queenslandica splicing factor U2AF 35 kDa subunit-like (LOC100634524), mRNA blastn 867 126 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
12097190 12097190 PRJNA641991_S_NODE_3930_length_268_cov_3.027397_g3811_i0 PRJNA641991 3930 268 3.027397 8.11342396 Oscarella lobularis 121494 Porifera other_Eukaryota 209 1.38e-49   NTclustered gi|2746775371|ref|XM_065971543.1| 121494 g3811 i0 85.222 147.268656716418 203 30 76 0 22 224 279 77 PREDICTED: Oscarella lobularis polyubiquitin (LOC136184629), mRNA blastn 39468 209 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis
14646667 14646667 PRJNA641991_P_NODE_2992_length_174_cov_1.240000_g2951_i0 PRJNA641991 2992 174 1.24 2.1576 Dysidea avara 196820 Porifera other_Eukaryota 165 1.7999999999999998e-36   NTclustered gi|2749590118|ref|XM_066061032.1| 196820 g2951 i0 84.431 86.2931034482759 167 26 96 0 3 169 1146 1312 PREDICTED: Dysidea avara polyubiquitin (LOC136266070), mRNA blastn 15015 165 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;