RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641991 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1893959 1893959 PRJNA641991_P_NODE_1142_length_305_cov_1.957031_g1101_i0 PRJNA641991 1142 305 1.957031 5.96894455 Strongyloides papillosus 174720 Nematoda Nematoda 62.1 4.72e-5   NTclustered gi|687022644|emb|LM525558.1| 174720 g1101 i0 97.222 0.118032786885246 36 1 12 0 270 305 210008 209973 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 36 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1894000 1894000 PRJNA641991_S_NODE_3042_length_301_cov_7.130952_g2923_i0 PRJNA641991 3042 301 7.130952 21.46416552 Auanema freiburgensis 1963013 Nematoda Nematoda 52.8 0.028   NTclustered gi|1527173533|gb|MH124555.1| 1963013 g2923 i0 100 0.0930232558139535 28 0 9 0 70 97 12755 12728 Auanema freiburgensis strain APS7 UNC-22 (unc-22) mRNA, partial cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema freiburgensis
8271031 8271031 PRJNA641991_S_NODE_13227_length_164_cov_1.330435_g13108_i0 PRJNA641991 13227 164 1.330435 2.1819134 Strongyloides ratti 34506 Nematoda Nematoda 158 2.82e-34   NTclustered gi|1376156977|ref|XM_024645910.1| 34506 g13108 i0 84.242 12.4085365853659 165 22 99 4 2 164 808 970 Strongyloides ratti RE01104p (SRAE_0000006900), partial mRNA blastn 2035 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10822036 10822036 PRJNA641991_S_NODE_8909_length_189_cov_0.878571_g8790_i0 PRJNA641991 8909 189 0.878571 1.66049919 Strongyloides ratti 34506 Nematoda Nematoda 126 9.419999999999999e-25   NTclustered gi|1376148363|ref|XM_024654883.1| 34506 g8790 i0 79.679 1.98412698412698 187 28 96 9 8 189 4955 4774 Strongyloides ratti Myosin heavy chain (SRAE_2000366400), partial mRNA blastn 375 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17195727 17195727 PRJNA641991_S_NODE_4534_length_251_cov_1.108911_g4415_i0 PRJNA641991 4534 251 1.108911 2.78336661 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 220 5.89e-53   NTclustered gi|270309007|dbj|AB500146.1| 6326 g4415 i0 82.47 102.302788844622 251 44 100 0 1 251 871 1121 Bursaphelenchus xylophilus Bx_act1 mRNA for actin, complete cds blastn 25678 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
24844094 24844094 PRJNA641991_S_NODE_12200_length_167_cov_0.864407_g12081_i0 PRJNA641991 12200 167 0.864407 1.44355969 Caenorhabditis briggsae 6238 Nematoda Nematoda 106 1.06e-18   NTclustered gi|268535627|ref|XM_002632903.1| 6238 g12081 i0 83.929 1.26347305389222 112 16 66 2 44 154 195 85 Caenorhabditis briggsae Protein CBG21705 (CBG21705), partial mRNA blastn 211 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;