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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641991 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6996298 6996298 PRJNA641991_P_NODE_2286_length_201_cov_1.342105_g2245_i0 PRJNA641991 2286 201 1.342105 2.69763105 Synchytrium sp. 1971732 Fungi Fungi 78.7 2.88e-10   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g2245 i0 85.333 0.373134328358209 75 11 37 0 122 196 906 980 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 75 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
22294885 22294885 PRJNA641991_S_NODE_3538_length_281_cov_1.099138_g3419_i0 PRJNA641991 3538 281 1.099138 3.08857778 uncultured Chytridiomycota 175247 Fungi Fungi 73.1 1.99e-8   NTclustered gi|262235206|gb|GQ995417.1| 175247 g3419 i0 84.416 21.3985765124555 77 9 27 3 194 269 831 905 Uncultured Chytridiomycota clone T1P1AeC08 18S ribosomal RNA gene, partial sequence blastn 6013 73.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
22294891 22294891 PRJNA641991_S_NODE_4498_length_252_cov_1.004926_g4379_i0 PRJNA641991 4498 252 1.004926 2.53241352 uncultured Rhizophydiales 687209 Fungi Fungi 122 1.7199999999999995e-23   NTclustered gi|1666220530|gb|MH643793.1| 687209 g4379 i0 82.517 6.6031746031746 143 21 55 2 8 146 823 965 Uncultured Rhizophydiales isolate SkChyt5 18S ribosomal RNA gene, partial sequence; putative homing endonuclease gene, complete cds; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1664 122 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;