RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641991 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4986759 4986759 PRJNA641991_S_NODE_13104_length_165_cov_0.879310_g12985_i0 PRJNA641991 13104 165 0.87931 1.4508615 Cutibacterium 1912216 Bacteria Bacteria 294 2.08e-75   NTclustered gi|1446500593|gb|CP031442.1| 1747 g12985 i0 100 51.0727272727273 159 0 96 0 1 159 845935 846093 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 8427 294 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
15186873 15186873 PRJNA641991_S_NODE_9512_length_184_cov_0.844444_g9393_i0 PRJNA641991 9512 184 0.844444 1.55377696 Rhodococcus 1827 Bacteria Bacteria 54.7 0.004   NTclustered gi|2088797821|gb|CP082159.1| 37919 g9393 i0 100 2.6195652173913 29 0 16 0 91 119 184193 184221 Rhodococcus opacus strain DSM 44186 plasmid pRop44186_a, complete sequence blastn 482 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus
15920611 15920611 PRJNA641991_S_NODE_13293_length_164_cov_0.886957_g13174_i0 PRJNA641991 13293 164 0.886957 1.45460948 Streptomyces malaysiensis 92644 Bacteria Bacteria 52.8 0.014   NTclustered gi|2619783426|gb|CP137895.1| 92644 g13174 i0 100 0.170731707317073 28 0 17 0 17 44 7943397 7943370 Streptomyces malaysiensis strain NA3722 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces malaysiensis
19744612 19744612 PRJNA641991_S_NODE_12036_length_167_cov_0.864407_g11917_i0 PRJNA641991 12036 167 0.864407 1.44355969 Tsukamurella tyrosinosolvens 57704 Bacteria Bacteria 292 7.58e-75   NTclustered gi|1540130960|emb|LR134451.1| 57704 g11917 i0 98.204 9.65269461077844 167 3 100 0 1 167 74127 73961 Tsukamurella tyrosinosolvens strain NCTC13231 genome assembly, plasmid: 9 blastn 1612 292 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens
24110287 24110287 PRJNA641991_S_NODE_5919_length_224_cov_1.165714_g5800_i0 PRJNA641991 5919 224 1.165714 2.61119936 Streptomyces 1883 Bacteria Bacteria 56.5 0.002   NTclustered gi|2015360468|gb|CP071839.1| 80860 g5800 i0 92.308 0.758928571428571 39 3 17 0 31 69 1621424 1621386 Streptomyces cyanogenus strain S136 chromosome, complete genome blastn 170 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cyanogenus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;