contig_metadata
16 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_kingdom = "Bacillati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2433554 | 2433554 | PRJNA641991_S_NODE_7662_length_201_cov_1.000000_g7543_i0 | PRJNA641991 | 7662 | 201 | 1 | 2.01 | Brevibacillus | 55080 | Bacteria | Bacteria | 248 | 2.08e-61 | NTclustered | gi|507148245|ref|NR_103052.1| | 1393 | g7543 | i0 | 90.476 | 1009.2039800995 | 189 | 16 | 94 | 2 | 1 | 188 | 769 | 956 | Brevibacillus brevis strain 47 23S ribosomal RNA gene, complete sequence | blastn | 202850 | 248 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Brevibacillus | Brevibacillus brevis | ||
| 4986759 | 4986759 | PRJNA641991_S_NODE_13104_length_165_cov_0.879310_g12985_i0 | PRJNA641991 | 13104 | 165 | 0.87931 | 1.4508615 | Cutibacterium | 1912216 | Bacteria | Bacteria | 294 | 2.08e-75 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g12985 | i0 | 100 | 51.0727272727273 | 159 | 0 | 96 | 0 | 1 | 159 | 845935 | 846093 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 8427 | 294 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 6996359 | 6996359 | PRJNA641991_S_NODE_6666_length_213_cov_1.243902_g6547_i0 | PRJNA641991 | 6666 | 213 | 1.243902 | 2.64951126 | Acholeplasmataceae bacterium | 1898209 | Bacteria | Bacteria | 150 | 6.459999999999998e-32 | NTclustered | gi|2907625690|emb|OZ223250.1| | 1898209 | g6547 | i0 | 79.71 | 4.89201877934272 | 207 | 42 | 97 | 0 | 3 | 209 | 262246 | 262040 | MAG: Acholeplasmataceae bacterium isolate c289da16-4743-485f-819d-17f5771af8e7 genome assembly, chromosome: 1 | blastn | 1042 | 150 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Acholeplasmataceae bacterium | |||
| 8811329 | 8811329 | PRJNA641991_S_NODE_2527_length_330_cov_2.548043_g2408_i0 | PRJNA641991 | 2527 | 330 | 2.548043 | 8.4085419 | Streptococcus | 1301 | Bacteria | Bacteria | 610 | 4.09e-170 | NTclustered | gi|1782758915|gb|CP018189.1| | 1304 | g2408 | i0 | 100 | 626.575757575758 | 330 | 0 | 100 | 0 | 1 | 330 | 17847 | 17518 | Streptococcus salivarius strain ICDC3 chromosome, complete genome | blastn | 206770 | 610 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus salivarius | ||
| 10821962 | 10821962 | PRJNA641991_P_NODE_3549_length_165_cov_0.879310_g3508_i0 | PRJNA641991 | 3549 | 165 | 0.87931 | 1.4508615 | Staphylococcus haemolyticus | 1283 | Bacteria | Bacteria | 305 | 9.59e-79 | NTclustered | gi|2851146212|gb|CP085027.1| | 1283 | g3508 | i0 | 100 | 41.6181818181818 | 165 | 0 | 100 | 0 | 1 | 165 | 1645411 | 1645247 | Staphylococcus haemolyticus strain SLM-175 chromosome, complete genome | blastn | 6867 | 305 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus haemolyticus | ||
| 15186873 | 15186873 | PRJNA641991_S_NODE_9512_length_184_cov_0.844444_g9393_i0 | PRJNA641991 | 9512 | 184 | 0.844444 | 1.55377696 | Rhodococcus | 1827 | Bacteria | Bacteria | 54.7 | 0.004 | NTclustered | gi|2088797821|gb|CP082159.1| | 37919 | g9393 | i0 | 100 | 2.6195652173913 | 29 | 0 | 16 | 0 | 91 | 119 | 184193 | 184221 | Rhodococcus opacus strain DSM 44186 plasmid pRop44186_a, complete sequence | blastn | 482 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus opacus | ||
| 15920611 | 15920611 | PRJNA641991_S_NODE_13293_length_164_cov_0.886957_g13174_i0 | PRJNA641991 | 13293 | 164 | 0.886957 | 1.45460948 | Streptomyces malaysiensis | 92644 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|2619783426|gb|CP137895.1| | 92644 | g13174 | i0 | 100 | 0.170731707317073 | 28 | 0 | 17 | 0 | 17 | 44 | 7943397 | 7943370 | Streptomyces malaysiensis strain NA3722 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces malaysiensis | ||
| 16461198 | 16461198 | PRJNA641991_S_NODE_14713_length_161_cov_0.910714_g14594_i0 | PRJNA641991 | 14713 | 161 | 0.910714 | 1.46624954 | Streptococcus | 1301 | Bacteria | Bacteria | 298 | 1.56e-76 | NTclustered | gi|1403302629|emb|LS483342.1| | 1311 | g14594 | i0 | 100 | 100 | 161 | 0 | 100 | 0 | 1 | 161 | 656016 | 655856 | Streptococcus agalactiae strain NCTC11930 genome assembly, chromosome: 1 | blastn | 16100 | 298 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus agalactiae | ||
| 17736308 | 17736308 | PRJNA641991_S_NODE_11574_length_169_cov_1.275000_g11455_i0 | PRJNA641991 | 11574 | 169 | 1.275 | 2.15475 | Streptococcus | 1301 | Bacteria | Bacteria | 313 | 5.859999999999999e-81 | NTclustered | gi|1403302629|emb|LS483342.1| | 1311 | g11455 | i0 | 100 | 634 | 169 | 0 | 100 | 0 | 1 | 169 | 19715 | 19883 | Streptococcus agalactiae strain NCTC11930 genome assembly, chromosome: 1 | blastn | 107146 | 313 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus agalactiae | ||
| 18470018 | 18470018 | PRJNA641991_S_NODE_2135_length_359_cov_1.645161_g2016_i0 | PRJNA641991 | 2135 | 359 | 1.645161 | 5.90612799 | Streptococcus porcinus | 1340 | Bacteria | Bacteria | 52.8 | 0.034 | NTclustered | gi|1988318085|gb|CP070236.1| | 1340 | g2016 | i0 | 100 | 0.467966573816156 | 28 | 0 | 8 | 0 | 20 | 47 | 1207591 | 1207564 | Streptococcus porcinus strain Colony573 chromosome | blastn | 168 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus porcinus | ||
| 19744612 | 19744612 | PRJNA641991_S_NODE_12036_length_167_cov_0.864407_g11917_i0 | PRJNA641991 | 12036 | 167 | 0.864407 | 1.44355969 | Tsukamurella tyrosinosolvens | 57704 | Bacteria | Bacteria | 292 | 7.58e-75 | NTclustered | gi|1540130960|emb|LR134451.1| | 57704 | g11917 | i0 | 98.204 | 9.65269461077844 | 167 | 3 | 100 | 0 | 1 | 167 | 74127 | 73961 | Tsukamurella tyrosinosolvens strain NCTC13231 genome assembly, plasmid: 9 | blastn | 1612 | 292 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Tsukamurellaceae | Tsukamurella | Tsukamurella tyrosinosolvens | ||
| 19744635 | 19744635 | PRJNA641991_S_NODE_4376_length_255_cov_1.723301_g4257_i0 | PRJNA641991 | 4376 | 255 | 1.723301 | 4.39441755 | Dehalococcoidia bacterium | 2026734 | Bacteria | Bacteria | 52.8 | 0.023 | NTclustered | gi|2621704807|emb|OY763072.1| | 2026734 | g4257 | i0 | 100 | 0.109803921568627 | 28 | 0 | 11 | 0 | 142 | 169 | 3446192 | 3446219 | MAG: Dehalococcoidia bacterium isolate 40e540cc-5106-4b3b-ab2b-631d7f64572a genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Chloroflexota | Dehalococcoidia | Dehalococcoidia bacterium | |||||
| 20284800 | 20284800 | PRJNA641991_S_NODE_13816_length_163_cov_0.894737_g13697_i0 | PRJNA641991 | 13816 | 163 | 0.894737 | 1.45842131 | Streptococcus | 1301 | Bacteria | Bacteria | 302 | 1.22e-77 | NTclustered | gi|909815781|gb|CP011327.1| | 1311 | g13697 | i0 | 100 | 126.134969325153 | 163 | 0 | 100 | 0 | 1 | 163 | 605322 | 605160 | Streptococcus agalactiae strain GX064 genome | blastn | 20560 | 302 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus agalactiae | ||
| 24110287 | 24110287 | PRJNA641991_S_NODE_5919_length_224_cov_1.165714_g5800_i0 | PRJNA641991 | 5919 | 224 | 1.165714 | 2.61119936 | Streptomyces | 1883 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|2015360468|gb|CP071839.1| | 80860 | g5800 | i0 | 92.308 | 0.758928571428571 | 39 | 3 | 17 | 0 | 31 | 69 | 1621424 | 1621386 | Streptomyces cyanogenus strain S136 chromosome, complete genome | blastn | 170 | 56.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces cyanogenus | ||
| 25384773 | 25384773 | PRJNA641991_S_NODE_12820_length_165_cov_1.181034_g12701_i0 | PRJNA641991 | 12820 | 165 | 1.181034 | 1.9487061 | Streptococcus | 1301 | Bacteria | Bacteria | 305 | 9.59e-79 | NTclustered | gi|1403302629|emb|LS483342.1| | 1311 | g12701 | i0 | 100 | 633.030303030303 | 165 | 0 | 100 | 0 | 1 | 165 | 19466 | 19302 | Streptococcus agalactiae strain NCTC11930 genome assembly, chromosome: 1 | blastn | 104450 | 305 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus agalactiae | ||
| 25384786 | 25384786 | PRJNA641991_S_NODE_8840_length_189_cov_1.685714_g8721_i0 | PRJNA641991 | 8840 | 189 | 1.685714 | 3.18599946 | Streptococcus | 1301 | Bacteria | Bacteria | 313 | 6.74e-81 | NTclustered | gi|2746253929|gb|PP939747.1| | 1306 | g8721 | i0 | 100 | 263.783068783069 | 169 | 0 | 89 | 0 | 21 | 189 | 191 | 23 | Streptococcus sp. strain 1-4 16S ribosomal RNA gene, partial sequence | blastn | 49855 | 313 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;