RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA641991 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
617757 617757 PRJNA641991_S_NODE_13821_length_163_cov_0.894737_g13702_i0 PRJNA641991 13821 163 0.894737 1.45842131 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.12e-5   NTclustered gi|2795027405|ref|XM_067926264.1| 4785 g13702 i0 100 3.85889570552147 32 0 20 0 8 39 1478 1447 Phytophthora cinnamomi putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin (IUM83_02354), partial mRNA blastn 629 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
2433541 2433541 PRJNA641991_S_NODE_11482_length_170_cov_0.842975_g11363_i0 PRJNA641991 11482 170 0.842975 1.4330575 Naviculaceae 67474 SAR_Eukaryotes SAR_Eukaryotes 309 7.64e-80   NTclustered gi|2301268953|ref|NC_066075.1| 355634 g11363 i0 99.412 197.994117647059 170 1 100 0 1 170 8725 8556 Navicula arenaria isolate Jiaozhou Bay in China chloroplast, complete genome blastn 33659 309 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula arenaria
6262081 6262081 PRJNA641991_S_NODE_1225_length_475_cov_9.889671_g1106_i0 PRJNA641991 1225 475 9.889671 46.97593725 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 233 1.5399999999999998e-56   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g1106 i0 87.081 41.9642105263158 209 23 44 4 1 207 1331 1537 A.klebsiana beta-tubulin gene, complete cds blastn 19933 235 0.991489361702128 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
6996316 6996316 PRJNA641991_S_NODE_10866_length_173_cov_4.330645_g10747_i0 PRJNA641991 10866 173 4.330645 7.49201585 Lagenidium sp. SL10 1702235 SAR_Eukaryotes SAR_Eukaryotes 165 1.79e-36   NTclustered gi|918464445|gb|KT257536.1| 1702235 g10747 i0 84.431 27.1156069364162 167 26 97 0 7 173 315 149 Lagenidium sp. SL10 isolate LEV5850 beta-tubulin gene, partial cds blastn 4691 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium sp. SL10
6996331 6996331 PRJNA641991_S_NODE_14846_length_161_cov_0.910714_g14727_i0 PRJNA641991 14846 161 0.910714 1.46624954 Aureococcus anophagefferens 44056 SAR_Eukaryotes SAR_Eukaryotes 111 2.18e-20   NTclustered gi|676382586|ref|XM_009036324.1| 44056 g14727 i0 80.272 0.91304347826087 147 29 91 0 2 148 291 145 Aureococcus anophagefferens hypothetical protein partial mRNA blastn 147 111 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens
7536291 7536291 PRJNA641991_P_NODE_1846_length_226_cov_2.129944_g1805_i0 PRJNA641991 1846 226 2.129944 4.81367344 Rhopalodiales 245176 SAR_Eukaryotes SAR_Eukaryotes 396 8.069999999999997e-106   NTclustered gi|2325195844|gb|OM494341.1| 186043 g1805 i0 98.661 197.738938053097 224 2 99 1 3 226 89290 89068 Entomoneis sp. isolate C2 plastid, complete genome blastn 44689 396 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae   Entomoneidaceae Entomoneis Entomoneis sp.
10086921 10086921 PRJNA641991_S_NODE_3588_length_279_cov_1.504348_g3469_i0 PRJNA641991 3588 279 1.504348 4.19713092 Isotrichidae 5985 SAR_Eukaryotes SAR_Eukaryotes 226 1.43e-54   NTclustered gi|92790147|emb|AJ965259.1| 40806 g3469 i0 87.958 99.8028673835125 191 23 69 0 89 279 1085 895 Dasytricha ruminantium partial mRNA for Polyubiqutin 3 (polyubiqutin 3 gene) blastn 27845 226 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Dasytricha Dasytricha ruminantium
12097183 12097183 PRJNA641991_S_NODE_2590_length_327_cov_1.284173_g2471_i0 PRJNA641991 2590 327 1.284173 4.19924571 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 100 1.08e-16   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g2471 i0 76.531 1.54128440366972 196 38 59 6 1 193 1275 1465 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 504 100 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
13371794 13371794 PRJNA641991_P_NODE_751_length_399_cov_1.391429_g710_i0 PRJNA641991 751 399 1.391429 5.55180171 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 161 6.09e-35   NTclustered gi|673024575|ref|XM_008868027.1| 157072 g710 i0 89.764 33.7142857142857 127 12 32 1 4 129 2262 2388 Aphanomyces invadans tubulin beta chain mRNA blastn 13452 161 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14646668 14646668 PRJNA641991_P_NODE_3132_length_170_cov_0.867769_g3091_i0 PRJNA641991 3132 170 0.867769 1.4752073 Schizochytrium sp. ATCC 20888 368446 SAR_Eukaryotes SAR_Eukaryotes 171 3.7599999999999997e-38   NTclustered gi|85822988|gb|DQ356660.1| 368446 g3091 i0 85.714 73.1176470588235 161 23 95 0 1 161 628 788 Schizochytrium sp. ATCC 20888 actin gene, partial cds blastn 12430 171 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp. ATCC 20888
15186865 15186865 PRJNA641991_S_NODE_15152_length_156_cov_2.214953_g15033_i0 PRJNA641991 15152 156 2.214953 3.45532668 Poteriospumella 1117026 SAR_Eukaryotes SAR_Eukaryotes 289 9e-74   NTclustered gi|685431582|gb|KF697341.1| 1117027 g15033 i0 100 80.5961538461538 156 0 100 0 1 156 111 266 Poteriospumella lacustris strain JBC07 28S ribosomal RNA gene, partial sequence blastn 12573 289 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
15920664 15920664 PRJNA641991_S_NODE_9213_length_186_cov_1.299270_g9094_i0 PRJNA641991 9213 186 1.29927 2.4166422 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 220 4.12e-53   NTclustered gi|675203540|ref|XM_008912407.1| 761204 g9094 i0 88.462 78.747311827957 182 21 98 0 4 185 397 216 Phytophthora parasitica INRA-310 actin-1 mRNA blastn 14647 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16461197 16461197 PRJNA641991_S_NODE_14553_length_161_cov_1.366071_g14434_i0 PRJNA641991 14553 161 1.366071 2.19937431 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 99 1.69e-16   NTclustered gi|2248513400|ref|NC_063804.1| 4784 g14434 i0 83.654 6.4472049689441 104 17 65 0 3 106 17471 17368 Phytophthora capsici isolate TaiwanPc33e mitochondrion, complete genome blastn 1038 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
17736315 17736315 PRJNA641991_S_NODE_4634_length_248_cov_4.592965_g4515_i0 PRJNA641991 4634 248 4.592965 11.3905532 Entomoneis 186042 SAR_Eukaryotes SAR_Eukaryotes 431 2.47e-116   NTclustered gi|2325195844|gb|OM494341.1| 186043 g4515 i0 97.992 192.79435483871 249 3 100 2 1 248 89064 89311 Entomoneis sp. isolate C2 plastid, complete genome blastn 47813 431 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae   Entomoneidaceae Entomoneis Entomoneis sp.
21560366 21560366 PRJNA641991_S_NODE_1117_length_502_cov_18.938190_g998_i0 PRJNA641991 1117 502 18.93819 95.0697138 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 233 1.63e-56   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g998 i0 87.081 39.6334661354582 209 23 41 4 296 502 1537 1331 A.klebsiana beta-tubulin gene, complete cds blastn 19896 235 0.991489361702128 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
23570496 23570496 PRJNA641991_S_NODE_2779_length_316_cov_1.501873_g2660_i0 PRJNA641991 2779 316 1.501873 4.74591868 Phytophthora boehmeriae 109152 SAR_Eukaryotes SAR_Eukaryotes 283 9.64e-72   NTclustered gi|1133565931|gb|KU518486.1| 109152 g2660 i0 83.226 95.7088607594937 310 50 98 2 8 316 330 22 Phytophthora boehmeriae strain OCPC27 translation elongation factor 1-alpha gene, partial cds blastn 30244 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;