RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA641991" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA641991 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9546343 9546343 PRJNA641991_P_NODE_188_length_870_cov_9.881851_g5_i1 PRJNA641991 188 870 9.881851 85.9721037 Jakoba libera 143017 Root_unresolved Root_unresolved 130 3.94e-25   NTclustered gi|501595239|ref|NC_021127.1| 143017 g5 i1 78.866 0.497701149425287 194 39 22 2 256 448 92507 92315 Jakoba libera strain ATCC 50422 mitochondrion, complete genome blastn 433 130 1 Eukaryota Discoba       Jakobida Jakobidae Jakoba Jakoba libera
12097162 12097162 PRJNA641991_S_NODE_10610_length_175_cov_1.952381_g10491_i0 PRJNA641991 10610 175 1.952381 3.41666675 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 52.8 0.015   NTclustered gi|1002445757|ref|XM_015803672.1| 157538 g10491 i0 100 0.16 28 0 16 0 63 90 453 426 Leptomonas pyrrhocoris hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;