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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 31 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1156035 1156035 PRJNA641707_P_NODE_11061_length_646_cov_283.077052_g8977_i0 PRJNA641707 11061 646 283.077052 1828.67775592 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 675 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g8977 i0 85.781 32.202786377709 647 81 99 9 2 646 1267 1904 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 20803 678 0.995575221238938 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
1156520 1156520 PRJNA641707_P_NODE_165361_length_203_cov_7.461039_g162698_i0 PRJNA641707 165361 203 7.461039 15.14590917 Hartmannellidae 5776 Tubulinea other_Eukaryota 368 1.55e-97   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g162698 i0 100 79.1674876847291 199 0 98 0 5 203 288 486 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 16071 368 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
1889435 1889435 PRJNA641707_P_NODE_207622_length_196_cov_4.727891_g204959_i0 PRJNA641707 207622 196 4.727891 9.26666636 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 350 5.37e-92   NTclustered gi|300078496|gb|GU001158.1| 5778 g204959 i0 100 55.4897959183673 189 0 96 0 7 195 4088 4276 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10876 350 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3165058 3165058 PRJNA641707_P_NODE_248983_length_182_cov_14.112782_g246320_i0 PRJNA641707 248983 182 14.112782 25.68526324 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 272 1.0899999999999999e-68   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g246320 i0 97.484 85.7142857142857 159 4 87 0 14 172 1833 1675 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15600 272 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
3708981 3708981 PRJNA641707_P_NODE_274623_length_172_cov_6.479675_g271960_i0 PRJNA641707 274623 172 6.479675 11.145041 Polychaos 2663723 Tubulinea other_Eukaryota 276 7.860000000000001e-70   NTclustered gi|1771808153|gb|MN633272.1| 2663724 g271960 i0 96.407 87.9883720930233 167 6 97 0 1 167 326 160 Polychaos annulatum strain Pushkin P1 small subunit ribosomal RNA gene, partial sequence blastn 15134 276 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos annulatum
4439353 4439353 PRJNA641707_P_NODE_139744_length_242_cov_3.678756_g137081_i0 PRJNA641707 139744 242 3.678756 8.90258952 Tubulinea group 04 sp. CAL7 1215996 Tubulinea other_Eukaryota 189 1.5899999999999996e-43   NTclustered gi|399764276|gb|JQ271787.1| 1215996 g137081 i0 100 6.6900826446281 102 0 81 0 1 102 263 162 Tubulinea group 04 sp. CAL7 18S ribosomal RNA gene, partial sequence blastn 1619 189 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL7
4442553 4442553 PRJNA641707_P_NODE_279004_length_171_cov_1.319672_g276341_i0 PRJNA641707 279004 171 1.319672 2.25663912 Polychaos centronucleolus 2762048 Tubulinea other_Eukaryota 292 7.75e-75   NTclustered gi|1887703455|gb|MT874850.1| 2762048 g276341 i0 98.78 94.2046783625731 164 2 96 0 2 165 373 210 Polychaos centronucleolus strain DKis1.1 small subunit ribosomal RNA gene, partial sequence blastn 16109 292 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos centronucleolus
4443375 4443375 PRJNA641707_P_NODE_312384_length_161_cov_2.276786_g309721_i0 PRJNA641707 312384 161 2.276786 3.66562546 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 200 4.5099999999999985e-47   NTclustered gi|145386791|gb|EF216916.1| 136459 g309721 i0 89.809 94.9254658385093 157 15 97 1 1 156 1613 1457 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 15283 200 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
4985118 4985118 PRJNA641707_P_NODE_21244_length_472_cov_634.215130_g18710_i0 PRJNA641707 21244 472 634.21513 2993.4954136 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 344 6.7599999999999985e-90   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g18710 i0 80.297 8.03389830508475 472 80 98 13 2 465 467 1 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 3792 344 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
5719345 5719345 PRJNA641707_P_NODE_316925_length_159_cov_3.700000_g314262_i0 PRJNA641707 316925 159 3.7 5.883 Copromyxa flindersi 3050410 Tubulinea other_Eukaryota 202 1.2399999999999998e-47   NTclustered gi|2513086415|gb|OR081327.1| 3050410 g314262 i0 90.728 69.3584905660377 151 14 95 0 7 157 383 533 Copromyxa flindersi strain KI4.1.H5.3 small subunit ribosomal RNA gene, partial sequence blastn 11028 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa flindersi
6260442 6260442 PRJNA641707_P_NODE_20545_length_480_cov_27.593968_g18026_i0 PRJNA641707 20545 480 27.593968 132.4510464 Tubulinea 555369 Tubulinea other_Eukaryota 191 9.5e-44   NTclustered gi|300078496|gb|GU001158.1| 5778 g18026 i0 86.034 37.3125 179 23 37 2 6 183 4023 4200 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17910 191 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7534427 7534427 PRJNA641707_P_NODE_17706_length_517_cov_14.493590_g15275_i0 PRJNA641707 17706 517 14.49359 74.9318603 Hartmannellidae 5776 Tubulinea other_Eukaryota 420 1.2099999999999999e-112   NTclustered gi|33946340|gb|AY294147.1| 239731 g15275 i0 81.749 44.7234042553191 526 75 99 16 2 513 1743 1225 Hartmannella cantabrigiensis small subunit ribosomal RNA gene, partial sequence blastn 23122 420 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
8809971 8809971 PRJNA641707_P_NODE_24127_length_443_cov_12.969543_g21558_i0 PRJNA641707 24127 443 12.969543 57.45507549 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 176 2.44e-39   NTclustered gi|292559443|ref|NC_013986.1| 5778 g21558 i0 80.851 54.2257336343115 235 35 73 6 2 233 27892 27665 Hartmannella vermiformis mitochondrion, complete genome blastn 24022 176 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8811073 8811073 PRJNA641707_P_NODE_72187_length_247_cov_6.873737_g69524_i0 PRJNA641707 72187 247 6.873737 16.97813039 Saccamoeba 136463 Tubulinea other_Eukaryota 239 1.6e-58   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g69524 i0 96.528 76.9757085020243 144 5 99 0 4 147 1292 1435 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 19013 239 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
9545761 9545761 PRJNA641707_P_NODE_7468_length_781_cov_34.577869_g5743_i0 PRJNA641707 7468 781 34.577869 270.05315689 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 994 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g5743 i0 89.833 34.8463508322663 777 75 99 3 6 779 2258 3033 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27215 994 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
12095739 12095739 PRJNA641707_P_NODE_38670_length_350_cov_3.551495_g36030_i0 PRJNA641707 38670 350 3.551495 12.4302325 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 128 5.34e-25   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g36030 i0 84.444 32.8742857142857 135 16 38 4 2 134 3353 3222 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11506 128 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
12096870 12096870 PRJNA641707_P_NODE_88810_length_246_cov_5.934010_g86147_i0 PRJNA641707 88810 246 5.93401 14.5976646 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 187 5.839999999999998e-43   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g86147 i0 100 6.96747967479675 101 0 79 0 146 246 1091 1191 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 1714 187 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
12635427 12635427 PRJNA641707_P_NODE_157630_length_220_cov_8.783626_g154967_i0 PRJNA641707 157630 220 8.783626 19.3239772 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 387 4.7e-103   NTclustered gi|399764177|gb|JQ271688.1| 5778 g154967 i0 99.07 97.7272727272727 215 2 98 0 1 215 371 157 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 21500 387 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12637012 12637012 PRJNA641707_P_NODE_46830_length_316_cov_11.363296_g44178_i0 PRJNA641707 46830 316 11.363296 35.90801536 Tubulinea 555369 Tubulinea other_Eukaryota 278 4.48e-70   NTclustered gi|259595680|gb|FJ705344.1| 675831 g44178 i0 82.759 73.5822784810127 319 48 99 5 2 314 741 424 Spumochlamys perforata actin gene, partial cds blastn 23252 279 0.996415770609319 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
13365872 13365872 PRJNA641707_P_NODE_14191_length_575_cov_3.001901_g11902_i0 PRJNA641707 14191 575 3.001901 17.26093075 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 669 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g11902 i0 94.366 38.7269565217391 426 21 89 2 147 569 4024 3599 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22268 669 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
13367942 13367942 PRJNA641707_P_NODE_23191_length_452_cov_15.213400_g20633_i0 PRJNA641707 23191 452 15.2134 68.764568 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 732 0   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g20633 i0 96.421 36.1482300884956 447 11 98 5 9 452 186 630 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 16339 732 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
14640878 14640878 PRJNA641707_P_NODE_15412_length_551_cov_18.183267_g13066_i0 PRJNA641707 15412 551 18.183267 100.18980117 Copromyxa flindersi 3050410 Tubulinea other_Eukaryota 473 9.77e-129   NTclustered gi|2513086415|gb|OR081327.1| 3050410 g13066 i0 89.446 69.8620689655172 379 35 77 5 173 549 752 1127 Copromyxa flindersi strain KI4.1.H5.3 small subunit ribosomal RNA gene, partial sequence blastn 38494 473 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa flindersi
18467611 18467611 PRJNA641707_P_NODE_30215_length_394_cov_4.098551_g27604_i0 PRJNA641707 30215 394 4.098551 16.14829094 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 340 7.18e-89   NTclustered gi|300078497|gb|GU001159.1| 200886 g27604 i0 82.382 3.95431472081218 403 60 100 9 1 394 2913 2513 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1558 340 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
19008020 19008020 PRJNA641707_P_NODE_168635_length_201_cov_11.625000_g165972_i0 PRJNA641707 168635 201 11.625 23.36625 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 361 2.5599999999999998e-95   NTclustered gi|11527305|gb|AF293898.1|AF293898 136456 g165972 i0 99 100.044776119403 200 2 99 0 1 200 1662 1463 Leptomyxa reticulata small subunit ribosomal RNA gene, complete sequence blastn 20109 364 0.991758241758242 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Leptomyxidae Leptomyxa Leptomyxa reticulata
19008494 19008494 PRJNA641707_P_NODE_228335_length_190_cov_24.602837_g225672_i0 PRJNA641707 228335 190 24.602837 46.7453903 Vermamoeba 1260114 Tubulinea other_Eukaryota 348 1.86e-91   NTclustered gi|89243398|gb|DQ407529.1| 5778 g225672 i0 100 99 188 0 99 0 2 189 253 440 Hartmannella vermiformis isolate WWS1.5 18S ribosomal RNA gene gene, partial sequence blastn 18810 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21014511 21014511 PRJNA641707_P_NODE_159817_length_215_cov_1.927711_g157154_i0 PRJNA641707 159817 215 1.927711 4.14457865 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 372 1.28e-98   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g157154 i0 98.571 81.9255813953488 210 3 98 0 6 215 562 771 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 17614 372 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
21018313 21018313 PRJNA641707_P_NODE_323817_length_156_cov_6.672897_g321154_i0 PRJNA641707 323817 156 6.672897 10.40971932 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 202 1.21e-47   NTclustered gi|345452592|gb|JF694314.1| 136459 g321154 i0 90.728 84.0192307692308 151 14 97 0 6 156 148 298 Paraflabellula hoguae strain ATCC 30733 clone 2 actin gene, partial cds blastn 13107 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
22293173 22293173 PRJNA641707_P_NODE_331538_length_154_cov_2.200000_g328875_i0 PRJNA641707 331538 154 2.2 3.388 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 113 5.72e-21   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g328875 i0 82.707 0.863636363636364 133 18 85 4 24 154 4567 4696 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 133 113 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23566765 23566765 PRJNA641707_P_NODE_246419_length_183_cov_29.664179_g243756_i0 PRJNA641707 246419 183 29.664179 54.28544757 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 300 5.040000000000001e-77   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g243756 i0 96.667 39.7595628415301 180 6 98 0 1 180 3249 3070 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7276 300 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23566937 23566937 PRJNA641707_P_NODE_25379_length_432_cov_4.765013_g22793_i0 PRJNA641707 25379 432 4.765013 20.58485616 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 231 4.99e-56   NTclustered gi|511487963|gb|JX898537.1| 1260765 g22793 i0 95.804 3.44675925925926 143 6 33 0 285 427 368 226 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1489 231 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
24109336 24109336 PRJNA641707_P_NODE_28999_length_402_cov_6.691218_g26395_i0 PRJNA641707 28999 402 6.691218 26.89869636 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 418 3.3e-112   NTclustered gi|300078496|gb|GU001158.1| 5778 g26395 i0 96.8 49.8233830845771 250 8 62 0 1 250 1164 915 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20029 418 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;