RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5720320 5720320 PRJNA641707_P_NODE_56465_length_284_cov_11.417021_g53804_i0 PRJNA641707 56465 284 11.417021 32.42433964 uncultured Thermomicrobia bacterium 384764 Bacteria Bacteria 202 2.459999999999999e-47   NTclustered gi|333034894|gb|JF706686.1| 384764 g53804 i0 92.308 44.6830985915493 143 9 50 2 143 284 1122 1263 Uncultured Thermomicrobia bacterium clone w1-23 16S ribosomal RNA gene, partial sequence blastn 12690 202 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia       uncultured Thermomicrobia bacterium
6259579 6259579 PRJNA641707_P_NODE_10525_length_662_cov_759.171289_g8479_i0 PRJNA641707 10525 662 759.171289 5025.71393318 Thermomicrobium 499 Bacteria Bacteria 385 5.72e-102   NTclustered gi|507148389|ref|NR_103192.1| 500 g8479 i0 77.794 78.070996978852 680 114 99 32 2 662 1795 1134 Thermomicrobium roseum strain DSM 5159 23S ribosomal RNA gene, complete sequence blastn 51683 385 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
6260970 6260970 PRJNA641707_P_NODE_272865_length_173_cov_4.064516_g270202_i0 PRJNA641707 272865 173 4.064516 7.03161268 Sphaerobacter 2056 Bacteria Bacteria 311 2.17e-80   NTclustered gi|470485500|ref|NR_076704.1| 2057 g270202 i0 99.419 6.05780346820809 172 0 99 1 2 173 20 190 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 1048 311 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
10085151 10085151 PRJNA641707_P_NODE_183548_length_199_cov_13.733333_g180885_i0 PRJNA641707 183548 199 13.733333 27.32933267 Thermomicrobium 499 Bacteria Bacteria 84.2 6.12e-12   NTclustered gi|507148389|ref|NR_103192.1| 500 g180885 i0 96.078 0.738693467336683 51 2 26 0 130 180 373 423 Thermomicrobium roseum strain DSM 5159 23S ribosomal RNA gene, complete sequence blastn 147 84.2 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
12636720 12636720 PRJNA641707_P_NODE_320190_length_158_cov_2.706422_g317527_i0 PRJNA641707 320190 158 2.706422 4.27614676 Thermomicrobium 499 Bacteria Bacteria 193 7.38e-45   NTclustered gi|507148389|ref|NR_103192.1| 500 g317527 i0 89.172 9.77848101265823 157 13 97 3 5 158 47 202 Thermomicrobium roseum strain DSM 5159 23S ribosomal RNA gene, complete sequence blastn 1545 193 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
12637082 12637082 PRJNA641707_P_NODE_52650_length_296_cov_6.858300_g49991_i0 PRJNA641707 52650 296 6.8583 20.300568 Sphaerobacter 2056 Bacteria Bacteria 169 2.62e-37   NTclustered gi|470485500|ref|NR_076704.1| 2057 g49991 i0 79.842 161.10472972973 253 33 80 12 1 238 263 14 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 47687 169 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
13911420 13911420 PRJNA641707_P_NODE_288751_length_167_cov_6.203390_g286088_i0 PRJNA641707 288751 167 6.20339 10.3596613 Thermomicrobium 499 Bacteria Bacteria 183 4.759999999999998e-42   NTclustered gi|507148389|ref|NR_103192.1| 500 g286088 i0 90.714 34.3413173652695 140 10 83 3 12 150 2855 2718 Thermomicrobium roseum strain DSM 5159 23S ribosomal RNA gene, complete sequence blastn 5735 183 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
19009831 19009831 PRJNA641707_P_NODE_9135_length_707_cov_7.852584_g7228_i0 PRJNA641707 9135 707 7.852584 55.51776888 Sphaerobacter 2056 Bacteria Bacteria 180 3.11e-40   NTclustered gi|470485500|ref|NR_076704.1| 2057 g7228 i0 84.409 38.9405940594059 186 26 45 3 92 275 1527 1343 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 27531 180 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
21558313 21558313 PRJNA641707_P_NODE_15517_length_549_cov_10.496000_g13169_i0 PRJNA641707 15517 549 10.496 57.62304 Sphaerobacter 2056 Bacteria Bacteria 220 1.4e-52   NTclustered gi|470485500|ref|NR_076704.1| 2057 g13169 i0 81.315 164.24043715847 289 38 50 10 264 538 300 14 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 90168 220 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
22834173 22834173 PRJNA641707_P_NODE_20238_length_484_cov_10.275862_g17727_i0 PRJNA641707 20238 484 10.275862 49.73517208 Sphaerobacter 2056 Bacteria Bacteria 196 2.06e-45   NTclustered gi|470485500|ref|NR_076704.1| 2057 g17727 i0 80.916 39.8780991735537 262 38 52 10 184 434 269 9 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 19301 196 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
25382745 25382745 PRJNA641707_P_NODE_158880_length_217_cov_5.946429_g156217_i0 PRJNA641707 158880 217 5.946429 12.90375093 Sphaerobacter 2056 Bacteria Bacteria 134 6.650000000000001e-27   NTclustered gi|470485500|ref|NR_076704.1| 2057 g156217 i0 78.605 99.9723502304147 215 37 96 7 7 215 14 225 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 21694 134 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
25384121 25384121 PRJNA641707_P_NODE_335960_length_152_cov_4.077670_g333297_i0 PRJNA641707 335960 152 4.07767 6.1980584 Sphaerobacter 2056 Bacteria Bacteria 135 1.2e-27   NTclustered gi|470485500|ref|NR_076704.1| 2057 g333297 i0 85.938 231.427631578947 128 16 84 2 1 127 1756 1630 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 35177 135 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;