RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Rhodophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 25 ✖

bioproject 1

  • PRJNA641707 · 25 ✖

analysis 1

  • blastn · 25 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3163691 3163691 PRJNA641707_P_NODE_18983_length_500_cov_69.443459_g16504_i0 PRJNA641707 18983 500 69.443459 347.217295 Rhodella violacea 2801 Rhodophyta other_Eukaryota 63.9 2.26e-5   NTclustered gi|1812772007|gb|MT117934.1| 2801 g16504 i0 100 0.068 34 0 7 0 57 90 5606 5639 Rhodella violacea strain CCMP736 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34 63.9 1 Eukaryota     Rhodophyta Rhodellophyceae Rhodellales Rhodellaceae Rhodella Rhodella violacea
4441726 4441726 PRJNA641707_P_NODE_244104_length_184_cov_19.029630_g241441_i0 PRJNA641707 244104 184 19.02963 35.0145192 Ahnfeltia fastigiata 31363 Rhodophyta other_Eukaryota 71.3 4.33e-8   NTclustered gi|2127873162|ref|NC_058738.1| 31363 g241441 i0 89.655 27.3315217391304 58 2 32 4 58 115 6760 6813 Ahnfeltia fastigiata voucher SKK003979 mitochondrion, complete genome blastn 5029 71.3 1 Eukaryota     Rhodophyta Florideophyceae Ahnfeltiales Ahnfeltiaceae Ahnfeltia Ahnfeltia fastigiata
4986418 4986418 PRJNA641707_P_NODE_66844_length_258_cov_2.703349_g64181_i0 PRJNA641707 66844 258 2.703349 6.97464042 Rhodophyta 2763 Rhodophyta other_Eukaryota 78.7 3.87e-10   NTclustered gi|1070107661|ref|NC_031146.1| 31481 g64181 i0 80.556 56.4883720930233 108 15 40 5 46 148 154040 154146 Hildenbrandia rubra plastid, complete genome blastn 14574 78.7 1 Eukaryota     Rhodophyta Florideophyceae Hildenbrandiales Hildenbrandiaceae Hildenbrandia Hildenbrandia rubra
6261609 6261609 PRJNA641707_P_NODE_45605_length_321_cov_5.290441_g42954_i0 PRJNA641707 45605 321 5.290441 16.98231561 Corallinales 31395 Rhodophyta other_Eukaryota 71.3 8.31e-8   NTclustered gi|1839347089|gb|MT325691.1| 48978 g42954 i0 87.302 9.23676012461059 63 7 19 1 1 62 600 538 Jania rubens voucher VPF00439 28S ribosomal RNA gene, partial sequence blastn 2965 71.3 1 Eukaryota     Rhodophyta Florideophyceae Corallinales Corallinaceae Jania Jania rubens
6990415 6990415 PRJNA641707_P_NODE_15206_length_555_cov_40.409091_g12868_i0 PRJNA641707 15206 555 40.409091 224.27045505 Rhodella violacea 2801 Rhodophyta other_Eukaryota 93.5 3.22e-14   NTclustered gi|1812772007|gb|MT117934.1| 2801 g12868 i0 84.946 8.11531531531532 93 13 17 1 458 550 5639 5548 Rhodella violacea strain CCMP736 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4504 93.5 1 Eukaryota     Rhodophyta Rhodellophyceae Rhodellales Rhodellaceae Rhodella Rhodella violacea
6992078 6992078 PRJNA641707_P_NODE_224306_length_192_cov_4.594406_g221643_i0 PRJNA641707 224306 192 4.594406 8.82125952 Campylaephora sungminbooi 1896769 Rhodophyta other_Eukaryota 169 1.57e-37   NTclustered gi|1070113604|ref|NC_031211.1| 1896769 g221643 i0 82.979 36.2395833333333 188 30 97 2 6 192 29239 29425 Ceramium sungminbooi voucher UC2050592 plastid, complete genome blastn 6958 169 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Ceramiaceae Campylaephora Campylaephora sungminbooi
6994171 6994171 PRJNA641707_P_NODE_31026_length_388_cov_23.433628_g28414_i0 PRJNA641707 31026 388 23.433628 90.92247664 Caloglossa rotundata 210932 Rhodophyta other_Eukaryota 104 1.01e-17   NTclustered gi|32365192|gb|AF522248.1| 210932 g28414 i0 83.621 0.896907216494845 116 14 29 4 34 147 540 652 Caloglossa rotundata isolate 3375 28S ribosomal RNA gene, partial sequence blastn 348 104 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Delesseriaceae Caloglossa Caloglossa rotundata
6996095 6996095 PRJNA641707_P_NODE_9166_length_706_cov_5.823440_g7256_i0 PRJNA641707 9166 706 5.82344 41.1134864 Renouxia sp. 2485823 Rhodophyta other_Eukaryota 261 1.08e-64   NTclustered gi|1510251550|gb|MH281622.1| 2485823 g7256 i0 82.828 45.5651558073654 297 45 42 5 30 323 2055 1762 Renouxia sp. mitochondrion, complete genome blastn 32169 261 1 Eukaryota     Rhodophyta Florideophyceae Rhodogorgonales Rhodogorgonaceae Renouxia Renouxia sp.
8810241 8810241 PRJNA641707_P_NODE_277727_length_171_cov_4.950820_g275064_i0 PRJNA641707 277727 171 4.95082 8.4659022 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 289 1e-73   NTclustered gi|1297588700|gb|MG647765.1| 2788 g275064 i0 97.076 100 171 5 100 0 1 171 1445 1615 Pyropia yezoensis voucher LYCN156 small subunit ribosomal RNA gene, partial sequence blastn 17100 289 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
9540475 9540475 PRJNA641707_P_NODE_153108_length_232_cov_2.142077_g150445_i0 PRJNA641707 153108 232 2.142077 4.96961864 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 97.1 9.45e-16   NTclustered gi|1207902100|ref|XR_002461581.1| 280699 g150445 i0 87.805 2.51293103448276 82 10 35 0 1 82 1970 1889 Cyanidioschyzon merolae strain 10D 28S ribosomal RNA rRNA blastn 583 97.1 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
9541787 9541787 PRJNA641707_P_NODE_209988_length_195_cov_9.952055_g207325_i0 PRJNA641707 209988 195 9.952055 19.40650725 Apoglossum ruscifolium 167976 Rhodophyta other_Eukaryota 141 3.5e-29   NTclustered gi|1631820753|gb|MK814614.1| 167976 g207325 i0 92 51.3641025641026 100 8 51 0 96 195 3280 3181 Apoglossum ruscifolium isolate PD2929_4_ plastid blastn 10016 141 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Delesseriaceae Apoglossum Apoglossum ruscifolium
9542299 9542299 PRJNA641707_P_NODE_23188_length_452_cov_15.868486_g20630_i0 PRJNA641707 23188 452 15.868486 71.72555672 Ceramium virgatum 193557 Rhodophyta other_Eukaryota 215 5.28e-51   NTclustered gi|116734034|gb|EF033544.1| 193557 g20630 i0 80.137 11.7986725663717 292 54 64 4 145 434 1483 1194 Ceramium virgatum voucher GWS002366 elongation factor 2 (EF2) gene, partial cds blastn 5333 215 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Ceramiaceae Ceramium Ceramium virgatum
11361517 11361517 PRJNA641707_P_NODE_67289_length_256_cov_61.995169_g64626_i0 PRJNA641707 67289 256 61.995169 158.70763264 Viridiplantae 33090 Rhodophyta other_Eukaryota 148 2.89e-31   NTclustered gi|2593449957|gb|OP122566.1| 2769 g64626 i0 78 87.78515625 250 45 96 10 1 245 2025 1781 Chondrus crispus chloroplast, complete genome blastn 22473 148 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
11361799 11361799 PRJNA641707_P_NODE_99809_length_246_cov_4.253807_g97146_i0 PRJNA641707 99809 246 4.253807 10.46436522 Rhodophyta 2763 Rhodophyta other_Eukaryota 71.3 6.13e-8   NTclustered gi|2675148558|gb|PP328475.1| 172987 g97146 i0 93.617 1.90650406504065 47 3 19 0 55 101 3439 3393 Melanthalia abscissa voucher WELT A024150 chloroplast, complete genome blastn 469 71.3 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Melanthalia Melanthalia abscissa
15916800 15916800 PRJNA641707_P_NODE_239073_length_186_cov_24.781022_g236410_i0 PRJNA641707 239073 186 24.781022 46.09270092 Pterocladiella media 1911541 Rhodophyta other_Eukaryota 76.8 9.44e-10   NTclustered gi|1102548707|ref|NC_031841.1| 1911541 g236410 i0 78.462 0.870967741935484 130 18 68 9 10 136 1485 1363 Pterocladia media voucher UC1884019 mitochondrion, complete genome blastn 162 76.8 1 Eukaryota     Rhodophyta Florideophyceae Gelidiales Pterocladiaceae Pterocladiella Pterocladiella media
15917077 15917077 PRJNA641707_P_NODE_25073_length_434_cov_20.015584_g22490_i0 PRJNA641707 25073 434 20.015584 86.86763456 Rhodella violacea 2801 Rhodophyta other_Eukaryota 130 1.88e-25   NTclustered gi|1812772007|gb|MT117934.1| 2801 g22490 i0 80.571 24.2626728110599 175 29 40 4 1 174 4878 4708 Rhodella violacea strain CCMP736 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10530 130 1 Eukaryota     Rhodophyta Rhodellophyceae Rhodellales Rhodellaceae Rhodella Rhodella violacea
17194576 17194576 PRJNA641707_P_NODE_53314_length_294_cov_3.979592_g50654_i0 PRJNA641707 53314 294 3.979592 11.70000048 Glaucosphaera vacuolata 38265 Rhodophyta other_Eukaryota 158 5.6199999999999996e-34   NTclustered gi|238617600|gb|FJ973375.1| 38265 g50654 i0 87.97 72.0986394557823 133 16 45 0 150 282 1681 1549 Glaucosphaera vacuolata strain UTEX LB 1662 28S ribosomal RNA gene, partial sequence blastn 21197 158 1 Eukaryota     Rhodophyta Rhodellophyceae Glaucosphaerales Glaucosphaeraceae Glaucosphaera Glaucosphaera vacuolata
17734754 17734754 PRJNA641707_P_NODE_215014_length_194_cov_8.682759_g212351_i0 PRJNA641707 215014 194 8.682759 16.84455246 Bangiaceae 31345 Rhodophyta other_Eukaryota 239 1.1999999999999999e-58   NTclustered gi|1016880943|ref|NC_029861.1| 60925 g212351 i0 88.889 179.298969072165 198 17 99 2 2 194 46496 46299 Porphyra pulchra plastid, complete genome blastn 34784 239 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia pulchra
17735113 17735113 PRJNA641707_P_NODE_26054_length_425_cov_15.300532_g23464_i0 PRJNA641707 26054 425 15.300532 65.027261 Batrachospermaceae 31371 Rhodophyta other_Eukaryota 71.3 1.13e-7   NTclustered gi|2136504360|gb|MN905507.1| 31373 g23464 i0 82.143 1.08 84 14 20 1 163 246 131387 131469 Batrachospermum sp. strain SAS-FKP1901 chloroplast, complete genome blastn 459 71.3 1 Eukaryota     Rhodophyta Florideophyceae Batrachospermales Batrachospermaceae Batrachospermum Batrachospermum sp.
19737773 19737773 PRJNA641707_P_NODE_107916_length_246_cov_3.172589_g105253_i0 PRJNA641707 107916 246 3.172589 7.80456894 Callithamnion tetricum 193179 Rhodophyta other_Eukaryota 119 2.16e-22   NTclustered gi|1631821048|gb|MK814616.1| 193179 g105253 i0 88.66 3.59756097560976 97 11 39 0 4 100 14449 14545 Callithamnion tetricum isolate PD2927 plastid blastn 885 119 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Callithamniaceae Callithamnion Callithamnion tetricum
19738837 19738837 PRJNA641707_P_NODE_155456_length_226_cov_4.096045_g152793_i0 PRJNA641707 155456 226 4.096045 9.2570617 Opuntiella californica 38362 Rhodophyta other_Eukaryota 121 5.44e-23   NTclustered gi|2587256370|gb|OP537213.1| 38362 g152793 i0 94.805 9.29203539823009 77 4 34 0 8 84 16549 16473 Opuntiella californica mitochondrion, complete genome blastn 2100 121 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales   Opuntiella Opuntiella californica
21014647 21014647 PRJNA641707_P_NODE_166117_length_202_cov_13.267974_g163454_i0 PRJNA641707 166117 202 13.267974 26.80130748 Dictyothamnion saltatum 81598 Rhodophyta other_Eukaryota 134 6.11e-27   NTclustered gi|186461586|gb|EU624166.1| 81598 g163454 i0 84.173 8.65841584158416 139 20 68 2 2 139 1058 921 Dictyothamnion saltatum voucher G0231 elongation factor 2 (EF2) gene, partial cds blastn 1749 134 1 Eukaryota     Rhodophyta Florideophyceae Rhodymeniales Champiaceae Dictyothamnion Dictyothamnion saltatum
22288209 22288209 PRJNA641707_P_NODE_114638_length_246_cov_2.172589_g111975_i0 PRJNA641707 114638 246 2.172589 5.34456894 Helminthocladia australis 260093 Rhodophyta other_Eukaryota 76.8 1.32e-9   NTclustered gi|953067458|gb|KT886130.1| 260093 g111975 i0 86.111 0.292682926829268 72 9 29 1 146 216 131 202 Helminthocladia australis voucher UNB:G0039 cytochrome b (COB) gene, partial cds; mitochondrial blastn 72 76.8 1 Eukaryota     Rhodophyta Florideophyceae Nemaliales Liagoraceae Helminthocladia Helminthocladia australis
22834035 22834035 PRJNA641707_P_NODE_181878_length_200_cov_3.185430_g179215_i0 PRJNA641707 181878 200 3.18543 6.37086 Ceramiales 2802 Rhodophyta other_Eukaryota 124 3.63e-24   NTclustered gi|1215845093|ref|NC_035295.1| 210852 g179215 i0 88.462 48.23 104 11 52 1 4 107 69893 69995 Taenioma perpusillum isolate PD1676 chloroplast, complete genome blastn 9646 124 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Delesseriaceae Taenioma Taenioma perpusillum
22835495 22835495 PRJNA641707_P_NODE_60558_length_273_cov_8.191964_g57897_i0 PRJNA641707 60558 273 8.191964 22.36406172 root 1 Root_unresolved Root_unresolved 104 6.82e-18   NTclustered gi|1016880337|ref|NC_029857.1| 48970 g57897 i0 91.892 115.252747252747 74 6 27 0 146 219 126256 126329 Sporolithon durum plastid, complete genome blastn 31464 104 1 Eukaryota     Rhodophyta Florideophyceae Sporolithales Sporolithaceae Sporolithon Sporolithon durum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;