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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1892297 1892297 PRJNA641707_P_NODE_331542_length_154_cov_2.190476_g328879_i0 PRJNA641707 331542 154 2.190476 3.37333304 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 150 4.359999999999999e-32   NTclustered gi|2274983416|gb|OP038912.1| 5725 g328879 i0 85.235 3.77272727272727 149 18 95 4 1 147 2659 2513 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 581 150 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
4444761 4444761 PRJNA641707_P_NODE_69784_length_251_cov_4.559406_g67121_i0 PRJNA641707 69784 251 4.559406 11.44410906 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 309 1.22e-79   NTclustered gi|10747|emb|Z18255.1| 5726 g67121 i0 89.754 4.70119521912351 244 22 97 2 9 251 20 261 Tritrichomonas muris 28S ribosomal RNA blastn 1180 309 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
5715317 5715317 PRJNA641707_P_NODE_140765_length_241_cov_11.078125_g138102_i0 PRJNA641707 140765 241 11.078125 26.69828125 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 435 1.84e-117   NTclustered gi|62466089|gb|AY886846.1| 5726 g138102 i0 100 91.5186721991701 235 0 98 0 7 241 441 675 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 22056 435 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
5720072 5720072 PRJNA641707_P_NODE_4585_length_965_cov_206.558952_g3344_i0 PRJNA641707 4585 965 206.558952 1993.2938868 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 67.6 3.49e-6   NTclustered gi|2806480431|ref|XM_068495080.1| 1144522 g3344 i0 88.889 0.52020725388601 54 6 6 0 369 422 1551 1498 Tritrichomonas foetus dnaK protein (TRFO_09824), partial mRNA blastn 502 67.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
6995154 6995154 PRJNA641707_P_NODE_49066_length_308_cov_7.976834_g46409_i0 PRJNA641707 49066 308 7.976834 24.56864872 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 58.4 6.18e-4   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g46409 i0 88 0.616883116883117 50 4 16 2 163 211 2605 2557 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 190 58.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
8266637 8266637 PRJNA641707_P_NODE_212287_length_195_cov_5.075342_g209624_i0 PRJNA641707 212287 195 5.075342 9.8969169 Simplicimonas similis 723912 Parabasalia other_Eukaryota 246 7.2e-61   NTclustered gi|530775353|gb|KC953858.1| 723912 g209624 i0 89.423 24.1692307692308 208 4 97 3 2 191 254 47 Simplicimonas similis isolate PCC3007 18S ribosomal RNA gene, partial sequence blastn 4713 246 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Simplicimonadidae Simplicimonas Simplicimonas similis
13365934 13365934 PRJNA641707_P_NODE_144471_length_240_cov_7.947644_g141808_i0 PRJNA641707 144471 240 7.947644 19.0743456 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2806455650|ref|XM_068492053.1| 1144522 g141808 i0 100 0.120833333333333 29 0 12 0 66 94 5492 5464 Tritrichomonas foetus uncharacterized protein (TRFO_04699), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
17190137 17190137 PRJNA641707_P_NODE_16274_length_538_cov_5.746421_g13892_i0 PRJNA641707 16274 538 5.746421 30.91574498 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 87.9 1.45e-12   NTclustered gi|2806440106|ref|XM_068497114.1| 1144522 g13892 i0 82.857 0.195167286245353 105 10 19 7 417 517 7259 7159 Tritrichomonas foetus Dynein heavy chain family protein (TRFO_13228), partial mRNA blastn 105 87.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
18469458 18469458 PRJNA641707_P_NODE_77435_length_246_cov_10.096447_g74772_i0 PRJNA641707 77435 246 10.096447 24.83725962 Tritrichomonas sp. BR-2011 1109411 Parabasalia other_Eukaryota 134 7.71e-27   NTclustered gi|357363755|gb|JF927156.1| 1109411 g74772 i0 97.468 30.3617886178862 79 1 32 1 149 226 1981 1903 Tritrichomonas sp. BR-2011 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7469 134 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas sp. BR-2011
19009562 19009562 PRJNA641707_P_NODE_58615_length_278_cov_11.777293_g55954_i0 PRJNA641707 58615 278 11.777293 32.74087454 Tritrichomonas 5723 Parabasalia other_Eukaryota 322 1.77e-83   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g55954 i0 100 79.1223021582734 174 0 97 0 1 174 339 166 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 21996 322 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
19741874 19741874 PRJNA641707_P_NODE_28696_length_404_cov_10.259155_g26095_i0 PRJNA641707 28696 404 10.259155 41.4469862 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 95.3 6.35e-15   NTclustered gi|123423503|ref|XM_001306390.1| 412133 g26095 i0 79.167 0.356435643564356 144 24 35 4 66 206 912 772 Trichomonas vaginalis G3 alpha-amylase family (TVAGG3_0367540), partial mRNA blastn 144 95.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
23565499 23565499 PRJNA641707_P_NODE_192339_length_198_cov_10.637584_g189676_i0 PRJNA641707 192339 198 10.637584 21.06241632 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 158 3.54e-34   NTclustered gi|2274983416|gb|OP038912.1| 5725 g189676 i0 95.876 4.41414141414141 97 4 49 0 96 192 1216 1120 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 874 158 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;