RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Nitrospinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6991662 6991662 PRJNA641707_P_NODE_206386_length_196_cov_6.816327_g203723_i0 PRJNA641707 206386 196 6.816327 13.36000092 Nitrospina watsonii 1323948 Bacteria Bacteria 172 1.25e-38   NTclustered gi|2427816174|emb|OX336137.1| 1323948 g203723 i0 83.684 201.377551020408 190 23 93 4 6 187 1935783 1935972 Nitrospina watsonii strain 347 genome assembly, chromosome: NSPWAT blastn 39470 172 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina watsonii
15919901 15919901 PRJNA641707_P_NODE_69833_length_251_cov_3.693069_g67170_i0 PRJNA641707 69833 251 3.693069 9.26960319 Candidatus Nitrohelix vancouverensis 2705534 Bacteria Bacteria 108 4.79e-19   NTclustered gi|1938442527|gb|CP048620.1| 2705534 g67170 i0 86.139 32.2589641434263 101 13 40 1 1 101 2187256 2187355 MAG: Candidatus Nitrohelix vancouverensis isolate VA-1 chromosome blastn 8097 108 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitrohelix Candidatus Nitrohelix vancouverensis
22293868 22293868 PRJNA641707_P_NODE_57258_length_282_cov_8.175966_g54597_i0 PRJNA641707 57258 282 8.175966 23.05622412 Candidatus Nitronauta litoralis 2705533 Bacteria Bacteria 93.5 1.53e-14   NTclustered gi|1938439011|gb|CP048685.1| 2705533 g54597 i0 77.206 2.98581560283688 136 26 46 1 34 164 3877717 3877582 MAG: Candidatus Nitronauta litoralis isolate EB chromosome, complete genome blastn 842 93.5 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitronauta Candidatus Nitronauta litoralis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;