RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
614321 614321 PRJNA641707_P_NODE_255941_length_180_cov_1.206107_g253278_i0 PRJNA641707 255941 180 1.206107 2.1709926 Hexamita inflata 28002 Fornicata other_Eukaryota 302 1.37e-77   NTclustered gi|459348792|gb|KC249997.1| 28002 g253278 i0 97.727 47.0111111111111 176 2 97 2 7 180 2133 2308 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 8462 302 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
1892599 1892599 PRJNA641707_P_NODE_40082_length_344_cov_6.403390_g37441_i0 PRJNA641707 40082 344 6.40339 22.0276616 Trepomonas agilis 45002 Fornicata other_Eukaryota 315 3.76e-81   NTclustered gi|2388677|gb|AF015455.1| 45002 g37441 i0 99.422 33.8313953488372 173 1 94 0 172 344 460 632 Trepomonas agilis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11638 315 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas agilis
13369722 13369722 PRJNA641707_P_NODE_311071_length_161_cov_4.794643_g308408_i0 PRJNA641707 311071 161 4.794643 7.71937523 Trepomonas agilis 45002 Fornicata other_Eukaryota 248 1.59e-61   NTclustered gi|2388677|gb|AF015455.1| 45002 g308408 i0 95.513 0.968944099378882 156 5 96 2 1 155 3091 2937 Trepomonas agilis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 156 248 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas agilis
13371638 13371638 PRJNA641707_P_NODE_93451_length_246_cov_5.167513_g90788_i0 PRJNA641707 93451 246 5.167513 12.71208198 Trepomonas agilis 45002 Fornicata other_Eukaryota 187 5.839999999999998e-43   NTclustered gi|2592099184|gb|OR670380.1| 45002 g90788 i0 100 31.0853658536585 101 0 80 0 146 246 713 813 Trepomonas agilis isolate SOOS4 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 7647 187 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas agilis
19007753 19007753 PRJNA641707_P_NODE_139815_length_242_cov_3.507772_g137152_i0 PRJNA641707 139815 242 3.507772 8.48880824 Enteromonas 460188 Fornicata other_Eukaryota 241 4.33e-59   NTclustered gi|156066408|gb|EF551180.1| 460189 g137152 i0 97.857 60.1198347107438 140 2 57 1 103 241 970 1109 Enteromonas hominis small subunit ribosomal RNA gene, partial sequence blastn 14549 241 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Enteromonas Enteromonas hominis
21019498 21019498 PRJNA641707_P_NODE_70637_length_249_cov_5.265000_g67974_i0 PRJNA641707 70637 249 5.265 13.10985 Trepomonas agilis 45002 Fornicata other_Eukaryota 431 2.4799999999999995e-116   NTclustered gi|2388677|gb|AF015455.1| 45002 g67974 i0 98.765 9.17670682730924 243 2 97 1 8 249 1988 2230 Trepomonas agilis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2285 431 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas agilis
23564331 23564331 PRJNA641707_P_NODE_141699_length_241_cov_6.682292_g139036_i0 PRJNA641707 141699 241 6.682292 16.10432372 Spironucleus muris 39710 Fornicata other_Eukaryota 187 5.699999999999998e-43   NTclustered gi|157932098|gb|EU043230.1| 39710 g139036 i0 100 2.29875518672199 101 0 81 0 1 101 624 524 Spironucleus muris small subunit ribosomal RNA gene, partial sequence blastn 554 187 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus muris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;