RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17194074 17194074 PRJNA641707_P_NODE_336154_length_152_cov_3.737864_g333491_i0 PRJNA641707 336154 152 3.737864 5.68155328 Haynesina germanica 45993 SAR_Eukaryotes SAR_Eukaryotes 134 4.31e-27   NTclustered gi|27734328|gb|AY099116.1| 45993 g333491 i0 83.803 15.25 142 22 93 1 2 142 351 210 Haynesina germanica isolate pub1 polyubiquitin gene, partial cds blastn 2318 134 1 Eukaryota Sar   Foraminifera   Rotaliida Nonionidae Haynesina Haynesina germanica
22291404 22291404 PRJNA641707_P_NODE_256018_length_179_cov_21.876923_g253355_i0 PRJNA641707 256018 179 21.876923 39.15969217 Foraminifera sp. chocolate silver saccamminid 1415197 SAR_Eukaryotes SAR_Eukaryotes 222 1.09e-53   NTclustered gi|745794572|gb|KF728632.1| 1415197 g253355 i0 89.266 61.2067039106145 177 19 99 0 2 178 309 485 Foraminifera sp. chocolate silver saccamminid clone CSS9 actin (act) gene, partial cds blastn 10956 222 1 Eukaryota Sar   Foraminifera         Foraminifera sp. chocolate silver saccamminid

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;