RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17735353 17735353 PRJNA641707_P_NODE_288034_length_167_cov_13.601695_g285371_i0 PRJNA641707 288034 167 13.601695 22.71483065 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 169 1.33e-37   NTclustered gi|3983425|gb|AF104308.1|AF104308 70186 g285371 i0 93.103 69.3652694610778 116 6 69 2 42 156 295 181 Spongospora subterranea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11584 169 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea
17735511 17735511 PRJNA641707_P_NODE_311714_length_161_cov_3.544643_g309051_i0 PRJNA641707 311714 161 3.544643 5.70687523 Plasmodiophoridae 37358 SAR_Eukaryotes SAR_Eukaryotes 267 4.39e-67   NTclustered gi|1938230909|gb|MW296909.1| 70182 g309051 i0 99.32 91.1614906832298 147 1 91 0 13 159 64 210 Polymyxa graminis isolate CN_SC-i01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14677 268 0.996268656716418 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa graminis
18467348 18467348 PRJNA641707_P_NODE_292955_length_166_cov_4.324786_g290292_i0 PRJNA641707 292955 166 4.324786 7.17914476 Vampyrellidae sp. 2588357 SAR_Eukaryotes SAR_Eukaryotes 132 1.74e-26   NTclustered gi|2106138080|gb|OK381875.1| 2588357 g290292 i0 83.007 91.7590361445783 153 19 90 7 7 155 1126 1275 Vampyrellidae sp. isolate SCO4 small subunit ribosomal RNA gene, partial sequence blastn 15232 132 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae   Vampyrellidae sp.
19008807 19008807 PRJNA641707_P_NODE_270415_length_174_cov_3.864000_g267752_i0 PRJNA641707 270415 174 3.864 6.72336 Plasmodiophoridae 37358 SAR_Eukaryotes SAR_Eukaryotes 87.9 4.01e-13   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g267752 i0 94.643 30.5574712643678 56 3 32 0 29 84 20015 19960 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 5317 87.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
19739435 19739435 PRJNA641707_P_NODE_179516_length_200_cov_5.543046_g176853_i0 PRJNA641707 179516 200 5.543046 11.086092 Placopus flabellus 1917526 SAR_Eukaryotes SAR_Eukaryotes 167 5.95e-37   NTclustered gi|1102585904|gb|KY124641.1| 1917526 g176853 i0 96.97 82.96 99 3 98 0 2 100 365 267 Placopus flabellus strain Hfla01 small subunit ribosomal RNA gene, partial sequence blastn 16592 167 1 Eukaryota Sar   Endomyxa   Vampyrellida Placopodidae Placopus Placopus flabellus
21013523 21013523 PRJNA641707_P_NODE_11357_length_638_cov_158.354839_g9249_i0 PRJNA641707 11357 638 158.354839 1010.30387282 Haplosporida sp. 2651821 SAR_Eukaryotes SAR_Eukaryotes 102 6.21e-17   NTclustered gi|1830680059|gb|MT334478.1| 2651821 g9249 i0 85.714 14.6128526645768 98 13 15 1 522 618 458 555 Haplosporida sp. isolate Water_P3Pool_Feb small subunit ribosomal RNA gene, partial sequence blastn 9323 102 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida     Haplosporida sp.
24843444 24843444 PRJNA641707_P_NODE_70720_length_249_cov_3.680000_g68057_i0 PRJNA641707 70720 249 3.68 9.1632 Vampyrellidae sp. 2588357 SAR_Eukaryotes SAR_Eukaryotes 241 4.48e-59   NTclustered gi|2106138081|gb|OK381876.1| 2588357 g68057 i0 83.268 58.0923694779116 257 28 99 11 2 249 1570 1320 Vampyrellidae sp. isolate BOP1 small subunit ribosomal RNA gene, partial sequence blastn 14465 241 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae   Vampyrellidae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;