RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10820035 10820035 PRJNA641707_P_NODE_317449_length_159_cov_2.736364_g314786_i0 PRJNA641707 317449 159 2.736364 4.35081876 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 154 3.51e-33   NTclustered gi|2874254054|emb|OY970378.1| 2762014 g314786 i0 84.967 382.295597484277 153 21 96 2 3 154 448704 448553 MAG: Candidatus Parcubacteria bacterium isolate MFD01275.bin.c.8 genome assembly, chromosome: 1 blastn 60785 154 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
12091898 12091898 PRJNA641707_P_NODE_173030_length_201_cov_4.289474_g170367_i0 PRJNA641707 173030 201 4.289474 8.62184274 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 113 7.910000000000001e-21   NTclustered gi|2314735967|dbj|AP024681.1| 2762014 g170367 i0 95.714 1.75621890547264 70 3 35 0 118 187 391646 391715 MAG: Candidatus Parcubacteria bacterium KatS3mg097 DNA, complete genome blastn 353 113 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
22293962 22293962 PRJNA641707_P_NODE_61638_length_270_cov_12.416290_g58977_i0 PRJNA641707 61638 270 12.41629 33.523983 Candidatus Sonnebornia yantaiensis 1732522 Bacteria Bacteria 457 4.49e-124   NTclustered gi|451927926|gb|KC495060.1| 1732522 g58977 i0 97.388 89.4814814814815 268 7 99 0 1 268 1410 1143 Candidatus Sonnebornia yantaiensis clone YTParaBac1 16S ribosomal RNA gene, partial sequence blastn 24160 457 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria       Candidatus Sonnebornia Candidatus Sonnebornia yantaiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;