RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5721036 5721036 PRJNA641707_P_NODE_89665_length_246_cov_5.786802_g87002_i0 PRJNA641707 89665 246 5.786802 14.23553292 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 76.8 1.32e-9   NTclustered gi|82523633|emb|AJ937675.1| 199737 g87002 i0 89.062 139.178861788618 64 3 25 4 39 99 3657 3719 Uncultured candidate division WS3 bacterium 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), clone b1bcf1.1.f04.rrna.clone7 blastn 34238 76.8 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
16459962 16459962 PRJNA641707_P_NODE_257553_length_179_cov_4.361538_g254890_i0 PRJNA641707 257553 179 4.361538 7.80715302 Bacteria 2 Bacteria Bacteria 174 3.1e-39   NTclustered gi|2518550840|emb|OX638317.1| 199737 g254890 i0 88.356 274.631284916201 146 16 81 1 7 151 3961042 3960897 MAG: uncultured Latescibacteria bacterium isolate cbbe8a84-e08a-4d06-a76e-2eb930d8ff24 genome assembly, chromosome: 1 blastn 49159 174 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
17189367 17189367 PRJNA641707_P_NODE_127854_length_244_cov_9.189744_g125191_i0 PRJNA641707 127854 244 9.189744 22.42297536 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 65.8 2.83e-6   NTclustered gi|2531976039|emb|OY282377.1| 199737 g125191 i0 90 0.475409836065574 50 5 20 0 51 100 916866 916817 MAG: uncultured Latescibacteria bacterium genome assembly, chromosome: 1 blastn 116 65.8 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;