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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641707 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
616784 616784 PRJNA641707_P_NODE_5781_length_878_cov_23.717732_g4329_i0 PRJNA641707 5781 878 23.717732 208.24168696 Blastocladiella emersonii 4808 Fungi Fungi 200 2.99e-46   NTclustered gi|2440036|emb|X90411.1| 4808 g4329 i0 76.845 16.125284738041 393 68 44 15 1 382 2470 2090 B.emersonii DNA for 28S ribosomal RNA gene blastn 14158 200 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
12637029 12637029 PRJNA641707_P_NODE_48050_length_312_cov_5.653992_g45396_i0 PRJNA641707 48050 312 5.653992 17.64045504 Fungi 4751 Fungi Fungi 111 4.74e-20   NTclustered gi|1405239019|ref|NG_027623.1| 64504 g45396 i0 86.869 31.7948717948718 99 13 32 0 210 308 1637 1539 Allomyces arbusculus UCBMG Brasil 2 28S rRNA gene, partial sequence; from reference material blastn 9920 111 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus
13365846 13365846 PRJNA641707_P_NODE_140231_length_242_cov_2.352332_g137568_i0 PRJNA641707 140231 242 2.352332 5.69264344 Physoderma sp. 2012393 Fungi Fungi 158 4.49e-34   NTclustered gi|1953481382|gb|MW448404.1| 2012393 g137568 i0 96.809 25.995867768595 94 3 39 0 2 95 354 447 Physoderma sp. voucher UWA:M.J. Barbetti 2a large subunit ribosomal RNA gene, partial sequence blastn 6291 158 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma sp.
20283281 20283281 PRJNA641707_P_NODE_21536_length_469_cov_8.866667_g18998_i0 PRJNA641707 21536 469 8.866667 41.58466823 Fungi 4751 Fungi Fungi 350 1.44e-91   NTclustered gi|321173705|gb|HQ888686.1| 28583 g18998 i0 92.975 51.2665245202559 242 14 51 3 228 468 711 950 Allomyces macrogynus strain Australia 3 18S ribosomal RNA gene, partial sequence blastn 24044 353 0.991501416430595 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
23570214 23570214 PRJNA641707_P_NODE_89679_length_246_cov_5.781726_g87016_i0 PRJNA641707 89679 246 5.781726 14.22304596 Blastocladiella emersonii 4808 Fungi Fungi 150 7.659999999999999e-32   NTclustered gi|2440036|emb|X90411.1| 4808 g87016 i0 95.699 1.82926829268293 93 4 38 0 9 101 3257 3349 B.emersonii DNA for 28S ribosomal RNA gene blastn 450 150 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;