RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_clade = "sulfur-oxidizing symbionts"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA641707 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19737849 19737849 PRJNA641707_P_NODE_110756_length_246_cov_2.776650_g108093_i0 PRJNA641707 110756 246 2.77665 6.830559 Catillopecten margaritatus gill symbiont 3083288 Bacteria Bacteria 62.1 3.69e-5   NTclustered gi|2707517441|gb|CP138327.1| 3083288 g108093 i0 97.222 6.34552845528455 36 1 15 0 159 194 842239 842274 MAG: Catillopecten margaritatus gill symbiont isolate Gill1 chromosome, complete genome blastn 1561 62.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Catillopecten margaritatus gill symbiont
19740500 19740500 PRJNA641707_P_NODE_225976_length_191_cov_8.985915_g223313_i0 PRJNA641707 225976 191 8.985915 17.16309765 Candidatus Vondammii sp. HM_W22 2687299 Bacteria Bacteria 110 9.61e-20   NTclustered gi|2666924061|gb|CP099567.1| 2687299 g223313 i0 89.535 67.4816753926702 86 9 45 0 3 88 335504 335589 Candidatus Vondammii sp. HM_W22 chromosome, complete genome blastn 12889 110 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Vondammii Candidatus Vondammii sp. HM_W22

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;