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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA641707" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 10 ✖

bioproject 1

  • PRJNA641707 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4440382 4440382 PRJNA641707_P_NODE_185104_length_199_cov_9.126667_g182441_i0 PRJNA641707 185104 199 9.126667 18.16206733 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 226 9.619999999999998e-55   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g182441 i0 88.265 55.894472361809 196 13 97 6 2 195 857 670 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 11123 226 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
4442852 4442852 PRJNA641707_P_NODE_29224_length_400_cov_40.116809_g26618_i0 PRJNA641707 29224 400 40.116809 160.467236 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 215 4.62e-51   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g26618 i0 96.875 30.95 128 4 32 0 5 132 288 415 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 12380 215 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
5718377 5718377 PRJNA641707_P_NODE_276645_length_171_cov_10.934426_g273982_i0 PRJNA641707 276645 171 10.934426 18.69786846 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 78.7 2.36e-10   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g273982 i0 97.826 0.269005847953216 46 0 26 1 122 166 2673 2628 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 46 78.7 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
12096331 12096331 PRJNA641707_P_NODE_63690_length_265_cov_8.763889_g61029_i0 PRJNA641707 63690 265 8.763889 23.22430585 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 86.1 2.39e-12   NTclustered gi|300078503|gb|GU001165.1| 238746 g61029 i0 76.271 23.6943396226415 177 32 64 8 93 262 4242 4069 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6279 86.1 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
13370362 13370362 PRJNA641707_P_NODE_35891_length_361_cov_12.323718_g33257_i0 PRJNA641707 35891 361 12.323718 44.48862198 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.56e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g33257 i0 92.537 19.3379501385042 67 5 19 0 142 208 4319 4253 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6981 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
17194333 17194333 PRJNA641707_P_NODE_41974_length_336_cov_5.749129_g39331_i0 PRJNA641707 41974 336 5.749129 19.31707344 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 226 1.76e-54   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g39331 i0 96.377 32.7083333333333 138 4 41 1 195 332 3343 3207 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 10990 226 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
19738748 19738748 PRJNA641707_P_NODE_15156_length_556_cov_20.145957_g12820_i0 PRJNA641707 15156 556 20.145957 112.01152092 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 448 5.9799999999999985e-121   NTclustered gi|390124886|dbj|AB686266.1| 1122280 g12820 i0 96.679 46.136690647482 271 5 49 3 287 556 757 1024 Rigifila ramosa gene for small subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 25652 448 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
19738967 19738967 PRJNA641707_P_NODE_160736_length_212_cov_23.263804_g158073_i0 PRJNA641707 160736 212 23.263804 49.31926448 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 207 3.76e-49   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g158073 i0 93.007 48.7971698113208 143 8 67 1 69 209 1866 1724 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 10345 207 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
24841326 24841326 PRJNA641707_P_NODE_284000_length_169_cov_2.358333_g281337_i0 PRJNA641707 284000 169 2.358333 3.98558277 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 111 2.3e-20   NTclustered gi|300078503|gb|GU001165.1| 238746 g281337 i0 80.645 2.23076923076923 155 20 88 8 21 168 1113 1264 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 377 111 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
25384374 25384374 PRJNA641707_P_NODE_55740_length_286_cov_13.645570_g53079_i0 PRJNA641707 55740 286 13.64557 39.0263302 Collodictyon 190324 Root_unresolved Root_unresolved 124 5.52e-24   NTclustered gi|1200177725|gb|MF039359.1| 190325 g53079 i0 87.273 4.62587412587413 110 13 38 1 120 228 2270 2379 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1323 124 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;