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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA640350" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA640350 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3707300 3707300 PRJNA640350_P_NODE_22243_length_205_cov_4.551136_g22082_i0 PRJNA640350 22243 205 4.551136 9.3298288 Naegleria 5761 Heterolobosea other_Eukaryota 379 7.229999999999999e-101   NTclustered gi|2618963742|gb|OR769034.1| 5762 g22082 i0 100 99.7170731707317 205 0 100 0 1 205 1858 1654 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 20442 379 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
4983836 4983836 PRJNA640350_P_NODE_18104_length_246_cov_4.165899_g17943_i0 PRJNA640350 18104 246 4.165899 10.24811154 Naegleria 5761 Heterolobosea other_Eukaryota 455 1.4500000000000002e-123   NTclustered gi|2351569|gb|U80057.1|NAU80057 5764 g17943 i0 100 100 246 0 100 0 1 246 1017 1262 Naegleria andersoni 18S ribosomal RNA gene, partial sequence blastn 24600 455 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria andersoni
10814678 10814678 PRJNA640350_P_NODE_28809_length_176_cov_1.564626_g28648_i0 PRJNA640350 28809 176 1.564626 2.75374176 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 169 1.4099999999999998e-37   NTclustered gi|291001644|ref|XM_002683343.1| 5762 g28648 i0 84.571 3.55113636363636 175 21 98 6 1 172 646 817 Naegleria gruberi ribosomal protein S5 (NAEGRDRAFT_55960), mRNA blastn 625 169 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11359006 11359006 PRJNA640350_P_NODE_16789_length_271_cov_8.049587_g16628_i0 PRJNA640350 16789 271 8.049587 21.81438077 Naegleria 5761 Heterolobosea other_Eukaryota 435 2.11e-117   NTclustered gi|2618963742|gb|OR769034.1| 5762 g16628 i0 95.572 10.3874538745387 271 12 100 0 1 271 5451 5721 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2815 435 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15913279 15913279 PRJNA640350_P_NODE_22133_length_206_cov_2.887006_g21972_i0 PRJNA640350 22133 206 2.887006 5.94723236 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 300 5.82e-77   NTclustered gi|290988433|ref|XM_002676880.1| 5762 g21972 i0 95.263 25.6116504854369 190 7 92 2 18 206 1374 1186 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82621), mRNA blastn 5276 300 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15913306 15913306 PRJNA640350_P_NODE_24973_length_190_cov_3.173913_g24812_i0 PRJNA640350 24973 190 3.173913 6.0304347 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 324 3.13e-84   NTclustered gi|290983673|ref|XM_002674507.1| 5762 g24812 i0 97.368 23.3210526315789 190 5 100 0 1 190 2293 2104 Naegleria gruberi translation elongation factor 2 (NAEGRDRAFT_56254), mRNA blastn 4431 324 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21012803 21012803 PRJNA640350_P_NODE_22157_length_206_cov_2.463277_g21996_i0 PRJNA640350 22157 206 2.463277 5.07435062 Naegleria andersoni 5764 Heterolobosea other_Eukaryota 359 9.47e-95   NTclustered gi|4321709|gb|AF058283.1|AF058283 5764 g21996 i0 98.058 88.0145631067961 206 4 100 0 1 206 899 694 Naegleria andersoni elongation factor 1 alpha (tef1) gene, partial cds blastn 18131 359 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria andersoni
22287430 22287430 PRJNA640350_P_NODE_16998_length_266_cov_4.907173_g16837_i0 PRJNA640350 16998 266 4.907173 13.05308018 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 377 3.53e-100   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g16837 i0 92.481 88.5112781954887 266 17 99 3 1 264 1009 745 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 23544 377 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;