RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA640350" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA640350 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10814770 10814770 PRJNA640350_P_NODE_38829_length_154_cov_1.392000_g38668_i0 PRJNA640350 38829 154 1.392 2.14368 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 121 3.4199999999999996e-23   NTclustered gi|2874254167|emb|OY970399.1| 171953 g38668 i0 83.088 25.0714285714286 136 19 87 4 19 152 1972736 1972603 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.6 genome assembly, chromosome: 1 blastn 3861 121 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14639289 14639289 PRJNA640350_P_NODE_24392_length_193_cov_2.445122_g24231_i0 PRJNA640350 24392 193 2.445122 4.71908546 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 156 1.23e-33   NTclustered gi|2874254056|emb|OY970380.1| 2651171 g24231 i0 82.258 2.38860103626943 186 27 95 6 8 191 629044 629225 MAG: Thermoanaerobaculia bacterium isolate MFD05537.bin.c.2 genome assembly, chromosome: 1 blastn 461 156 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;