RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA640143" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA640143 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885883 1885883 PRJNA640143_S_NODE_13922_length_233_cov_3.637755_g13712_i0 PRJNA640143 13922 233 3.637755 8.47596915 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 219 1.94e-52   NTclustered gi|2874253779|emb|OY969763.1| 412056 g13712 i0 88.827 37.931330472103 179 19 76 1 34 211 3833600 3833422 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 8838 219 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15912915 15912915 PRJNA640143_S_NODE_29033_length_161_cov_3.443548_g28823_i0 PRJNA640143 29033 161 3.443548 5.54411228 Congregicoccus parvus 3081749 Bacteria Bacteria 56.5 0.001   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g28823 i0 92.308 0.242236024844721 39 3 24 0 99 137 4161834 4161872 Opitutales bacterium ASA1 DNA, complete genome blastn 39 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;