RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA640143" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA640143 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12089387 12089387 PRJNA640143_S_NODE_26350_length_171_cov_63.298507_g26140_i0 PRJNA640143 26350 171 63.298507 108.24044697 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 255 1.02e-63   NTclustered gi|56757963|gb|AY815390.1| 6182 g26140 i0 99.296 60.2163742690058 142 0 82 1 1 141 918 777 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 10297 255 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
15912836 15912836 PRJNA640143_S_NODE_25533_length_174_cov_63.562044_g25323_i0 PRJNA640143 25533 174 63.562044 110.59795656 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 233 4.87e-57   NTclustered gi|56757963|gb|AY815390.1| 6182 g25323 i0 96.479 58.8793103448276 142 4 82 1 1 142 918 778 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 10245 233 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24836308 24836308 PRJNA640143_S_NODE_26680_length_170_cov_2.503759_g26470_i0 PRJNA640143 26680 170 2.503759 4.2563903 Marionfyfea adventor 3040208 Platyhelminthes Platyhelminthes 233 4.7299999999999995e-57   NTclustered gi|2893358306|gb|PV014941.1| 3040208 g26470 i0 91.279 34.3588235294118 172 13 100 2 1 170 156 327 Marionfyfea adventor isolate MarionAdv_2022-07 large subunit ribosomal RNA gene, partial sequence blastn 5841 233 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Marionfyfea Marionfyfea adventor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;