RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA640143" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA640143 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
609609 609609 PRJNA640143_S_NODE_11861_length_251_cov_12.836449_g11651_i0 PRJNA640143 11861 251 12.836449 32.21948699 Labilithrix luteola 1391654 Bacteria Bacteria 281 2.66e-71   NTclustered gi|913610804|gb|CP012333.1| 1391654 g11651 i0 90 197.362549800797 220 18 87 2 1 218 7089179 7088962 Labilithrix luteola strain DSM 27648, complete genome blastn 49538 281 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
13909336 13909336 PRJNA640143_S_NODE_16951_length_212_cov_5.097143_g16741_i0 PRJNA640143 16951 212 5.097143 10.80594316 Myxococcia 32015 Bacteria Bacteria 165 2.29e-36   NTclustered gi|913610804|gb|CP012333.1| 1391654 g16741 i0 83.516 76.7216981132076 182 25 84 3 34 212 3941790 3941969 Labilithrix luteola strain DSM 27648, complete genome blastn 16265 165 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22286721 22286721 PRJNA640143_S_NODE_11618_length_254_cov_1.764977_g11408_i0 PRJNA640143 11618 254 1.764977 4.48304158 Labilithrix luteola 1391654 Bacteria Bacteria 403 5.53e-108   NTclustered gi|913610804|gb|CP012333.1| 1391654 g11408 i0 95.276 143.484251968504 254 12 100 0 1 254 7089451 7089198 Labilithrix luteola strain DSM 27648, complete genome blastn 36445 403 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;