contig_metadata
6 rows where analysis = "blastn", bioproject = "PRJNA640143" and tax_phylum = "Armatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1155466 | 1155466 | PRJNA640143_S_NODE_23781_length_181_cov_1.354167_g23571_i0 | PRJNA640143 | 23781 | 181 | 1.354167 | 2.45104227 | root | 1 | Root_unresolved | Root_unresolved | 99 | 1.95e-16 | NTclustered | gi|2240447379|dbj|AP025739.1| | 2219043 | g23571 | i0 | 91.549 | 10.4806629834254 | 71 | 6 | 39 | 0 | 3 | 73 | 595994 | 595924 | Capsulimonas corticalis AX-7 DNA, complete genome | blastn | 1897 | 100 | 0.99 | Bacteria | Bacillati | Armatimonadota | Armatimonadia | Capsulimonadales | Capsulimonadaceae | Capsulimonas | Capsulimonas corticalis | ||
| 2430605 | 2430605 | PRJNA640143_S_NODE_20202_length_195_cov_12.943038_g19992_i0 | PRJNA640143 | 20202 | 195 | 12.943038 | 25.2389241 | Fimbriimonas | 1005038 | Bacteria | Bacteria | 69.4 | 1.67e-7 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g19992 | i0 | 95.455 | 59.3897435897436 | 44 | 1 | 22 | 1 | 1 | 43 | 29569 | 29612 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 11581 | 69.4 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 4437337 | 4437337 | PRJNA640143_S_NODE_11024_length_260_cov_1.825112_g10814_i0 | PRJNA640143 | 11024 | 260 | 1.825112 | 4.7452912 | uncultured Armatimonadetes bacterium | 157466 | Bacteria | Bacteria | 110 | 1.39e-19 | NTclustered | gi|2874253971|emb|OY970296.1| | 157466 | g10814 | i0 | 80.769 | 10.7115384615385 | 156 | 17 | 57 | 9 | 32 | 180 | 4214222 | 4214073 | MAG: uncultured Armatimonadetes bacterium isolate MFD04408.bin.1.1 genome assembly, chromosome: 1 | blastn | 2785 | 110 | 1 | Bacteria | Bacillati | Armatimonadota | uncultured Armatimonadetes bacterium | ||||||
| 8262983 | 8262983 | PRJNA640143_S_NODE_15907_length_219_cov_1.565934_g15697_i0 | PRJNA640143 | 15907 | 219 | 1.565934 | 3.42939546 | Fimbriimonas ginsengisoli | 1005039 | Bacteria | Bacteria | 219 | 1.8099999999999993e-52 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g15697 | i0 | 85.308 | 4.60730593607306 | 211 | 31 | 96 | 0 | 9 | 219 | 226820 | 226610 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 1009 | 219 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 15183969 | 15183969 | PRJNA640143_S_NODE_32772_length_150_cov_1.699115_g32562_i0 | PRJNA640143 | 32772 | 150 | 1.699115 | 2.5486725 | Chthonomonas | 1077265 | Bacteria | Bacteria | 91.6 | 2.59e-14 | NTclustered | gi|526641997|ref|NR_103994.1| | 454171 | g32562 | i0 | 88.312 | 1.02666666666667 | 77 | 7 | 51 | 2 | 1 | 76 | 185 | 260 | Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence | blastn | 154 | 91.6 | 1 | Bacteria | Bacillati | Armatimonadota | Chthonomonadia | Chthonomonadales | Chthonomonadaceae | Chthonomonas | Chthonomonas calidirosea | ||
| 20281918 | 20281918 | PRJNA640143_S_NODE_4976_length_368_cov_35.758308_g4766_i0 | PRJNA640143 | 4976 | 368 | 35.758308 | 131.59057343999999 | Fimbriimonas | 1005038 | Bacteria | Bacteria | 296 | 1.46e-75 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g4766 | i0 | 86.617 | 190.48097826087 | 269 | 34 | 73 | 2 | 67 | 334 | 29518 | 29785 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 70097 | 296 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;