RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA638724" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 10 ✖

bioproject 1

  • PRJNA638724 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5713213 5713213 PRJNA638724_P_NODE_3065_length_350_cov_3.043321_g2979_i0 PRJNA638724 3065 350 3.043321 10.6516235 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 298 3.85e-76   NTclustered gi|2701272534|gb|OR640980.1| 3003959 g2979 i0 82.883 0.951428571428571 333 55 95 2 1 332 2981 2650 Picornavirales sp. isolate Tuebingen RdRp (ORF1) and capsid protein (ORF2) genes, complete cds blastn 333 298 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
5713217 5713217 PRJNA638724_P_NODE_5325_length_277_cov_1.955882_g5239_i0 PRJNA638724 5325 277 1.955882 5.41779314 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 255 1.81e-63   NTclustered gi|2701272534|gb|OR640980.1| 3003959 g5239 i0 83.895 0.963898916967509 267 43 96 0 1 267 2116 1850 Picornavirales sp. isolate Tuebingen RdRp (ORF1) and capsid protein (ORF2) genes, complete cds blastn 267 255 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
8262829 8262829 PRJNA638724_P_NODE_3627_length_326_cov_2.399209_g3541_i0 PRJNA638724 3627 326 2.399209 7.82142134 brine shrimp partiti-like virus 4 2900391 Viruses Viruses 580 3.1599999999999993e-161   NTclustered gi|2209094893|gb|OL472518.1| 2900391 g3541 i0 99.685 12.659509202454 317 1 97 0 1 317 485 169 MAG: Brine shrimp partiti-like virus 4 isolate GSL/14 RNA-dependent RNA polymerase gene, complete cds blastn 4127 580 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   brine shrimp partiti-like virus 4
8262834 8262834 PRJNA638724_P_NODE_7427_length_242_cov_0.911243_g7341_i0 PRJNA638724 7427 242 0.911243 2.20520806 Caudoviricetes sp. 2832643 Viruses Viruses 342 1.16e-89   NTclustered gi|2914869935|gb|OR222861.1| 2832643 g7341 i0 93.133 8.29338842975207 233 16 96 0 1 233 6244 6476 MAG: Caudoviricetes sp. isolate MSP0489 genomic sequence blastn 2007 342 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12088991 12088991 PRJNA638724_P_NODE_5650_length_270_cov_1.081218_g5564_i0 PRJNA638724 5650 270 1.081218 2.9192886 Caudoviricetes sp. 2832643 Viruses Viruses 462 9.65e-126   NTclustered gi|2052998103|tpg|BK030969.1| 2832643 g5564 i0 98.473 443.459259259259 262 4 97 0 9 270 23 284 MAG TPA_asm: Caudoviricetes sp. isolate ctdoP9, partial genome blastn 119734 462 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12088992 12088992 PRJNA638724_P_NODE_6090_length_260_cov_1.957219_g6004_i0 PRJNA638724 6090 260 1.957219 5.0887694 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 311 3.54e-80   NTclustered gi|2701272534|gb|OR640980.1| 3003959 g6004 i0 89.157 0.957692307692308 249 27 96 0 11 259 1142 1390 Picornavirales sp. isolate Tuebingen RdRp (ORF1) and capsid protein (ORF2) genes, complete cds blastn 249 311 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
15912463 15912463 PRJNA638724_P_NODE_3853_length_317_cov_2.536885_g3767_i0 PRJNA638724 3853 317 2.536885 8.04192545 Beihai levi-like virus 25 1922411 Viruses Viruses 350 9.4e-92   NTclustered gi|1110864435|gb|KX883480.1| 1922411 g3767 i0 87.459 0.95583596214511 303 38 96 0 15 317 517 819 Beihai levi-like virus 25 strain BHSC163351 hypothetical protein genes, complete cds blastn 303 350 1 Viruses               Beihai levi-like virus 25
15912472 15912472 PRJNA638724_P_NODE_7493_length_241_cov_1.535714_g7407_i0 PRJNA638724 7493 241 1.535714 3.70107074 Cressdnaviricota sp. 2748378 Viruses Viruses 429 8.58e-116   NTclustered gi|2059635284|tpg|BK028490.1| 2748378 g7407 i0 100 0.962655601659751 232 0 96 0 1 232 863 1094 MAG TPA_asm: Cressdnaviricota sp. isolate ct2xv1, partial genome blastn 232 429 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
19736323 19736323 PRJNA638724_P_NODE_5996_length_262_cov_1.227513_g5910_i0 PRJNA638724 5996 262 1.227513 3.21608406 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 226 1.3299999999999994e-54   NTclustered gi|2701272534|gb|OR640980.1| 3003959 g5910 i0 83.004 0.965648854961832 253 39 96 3 2 253 5041 4792 Picornavirales sp. isolate Tuebingen RdRp (ORF1) and capsid protein (ORF2) genes, complete cds blastn 253 226 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
24835904 24835904 PRJNA638724_P_NODE_7320_length_243_cov_0.941176_g7234_i0 PRJNA638724 7320 243 0.941176 2.28705768 brine shrimp reovirus 1 2900474 Viruses Viruses 431 2.4099999999999995e-116   NTclustered gi|2209095661|gb|OL472736.1| 2900474 g7234 i0 100 19.1152263374486 233 0 96 0 11 243 1353 1585 MAG: Brine shrimp reovirus 1 isolate SC/15 segment 3 hypothetical protein gene, complete cds blastn 4645 431 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales     brine shrimp reovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;