RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA638724" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA638724 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1155356 1155356 PRJNA638724_P_NODE_3281_length_339_cov_6.469925_g3195_i0 PRJNA638724 3281 339 6.469925 21.93304575 Magnoliopsida 3398 Plants Plants 593 4.239999999999999e-165   NTclustered gi|2571153582|gb|OR493979.1| 46367 g3195 i0 99.388 101.879056047198 327 2 96 0 11 337 5393 5719 Bupleurum falcatum voucher 2009100601 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34537 593 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Bupleurum Bupleurum falcatum
8808256 8808256 PRJNA638724_P_NODE_5367_length_276_cov_2.497537_g5281_i0 PRJNA638724 5367 276 2.497537 6.89320212 Poaceae 4479 Plants Plants 492 1.26e-134   NTclustered gi|815859367|gb|KM036293.1| 4528 g5281 i0 100 105.04347826087 266 0 96 0 11 276 109 374 Oryza longistaminata 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 28992 492 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza longistaminata
9538133 9538133 PRJNA638724_P_NODE_6808_length_249_cov_0.875000_g6722_i0 PRJNA638724 6808 249 0.875 2.17875 Triticum aestivum 4565 Plants Plants 375 1.18e-99   NTclustered gi|300681466|emb|FN564430.1| 4565 g6722 i0 94.979 422.923694779116 239 12 96 0 1 239 1826806 1826568 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b blastn 105308 375 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
9538136 9538136 PRJNA638724_P_NODE_7028_length_246_cov_2.236994_g6942_i0 PRJNA638724 7028 246 2.236994 5.50300524 Juglans regia 51240 Plants Plants 52.8 0.022   NTclustered gi|1882605758|ref|XM_018997285.2| 51240 g6942 i0 96.774 0.126016260162602 31 1 13 0 1 31 223 253 PREDICTED: Juglans regia probable methyltransferase PMT10 (LOC109014785), transcript variant X1, mRNA blastn 31 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Juglandaceae Juglans Juglans regia
21557233 21557233 PRJNA638724_P_NODE_2397_length_388_cov_2.571429_g2311_i0 PRJNA638724 2397 388 2.571429 9.97714452 Poaceae 4479 Plants Plants 688 0   NTclustered gi|815859367|gb|KM036293.1| 4528 g2311 i0 99.213 107.023195876289 381 3 98 0 1 381 1036 656 Oryza longistaminata 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 41525 693 0.992784992784993 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza longistaminata
23562210 23562210 PRJNA638724_P_NODE_8399_length_208_cov_6.066667_g8313_i0 PRJNA638724 8399 208 6.066667 12.61866736 Hordeum vulgare 4513 Plants Plants 370 4.43e-98   NTclustered gi|2133478918|ref|XR_006618678.1| 112509 g8313 i0 99.51 1083.34134615385 204 0 98 1 6 208 1442 1645 PREDICTED: Hordeum vulgare subsp. vulgare 18S ribosomal RNA (LOC123419804), rRNA blastn 225335 370 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;