RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA638138" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA638138 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885725 1885725 PRJNA638138_P_NODE_6542_length_389_cov_4.310127_g6327_i0 PRJNA638138 6542 389 4.310127 16.76639403 Mytilus edulis 6550 Mollusca Mollusca 222 2.68e-53   NTclustered gi|2912330725|ref|XM_071278780.1| 6550 g6327 i0 81.887 13.6298200514139 265 46 68 2 5 268 879 616 PREDICTED: Mytilus edulis soma ferritin-like (LOC139491251), mRNA blastn 5302 222 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
4437209 4437209 PRJNA638138_P_NODE_33584_length_242_cov_0.911243_g33369_i0 PRJNA638138 33584 242 0.911243 2.20520806 Atrina pectinata 49198 Mollusca Mollusca 442 1.1099999999999995e-119   NTclustered gi|2337352613|gb|ON193523.1| 49198 g33369 i0 99.587 2 242 1 100 0 1 242 7297 7056 Atrina pectinata mitochondrion, complete genome blastn 484 442 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pinnidae Atrina Atrina pectinata
8262535 8262535 PRJNA638138_P_NODE_17147_length_265_cov_1.604167_g16932_i0 PRJNA638138 17147 265 1.604167 4.25104255 Lottia gigantea 225164 Mollusca Mollusca 132 3.02e-26   NTclustered gi|676469251|ref|XM_009060224.1| 225164 g16932 i0 83.571 3.86037735849057 140 23 53 0 125 264 317 178 Lottia gigantea hypothetical protein mRNA blastn 1023 132 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
14638272 14638272 PRJNA638138_P_NODE_22552_length_249_cov_0.875000_g22337_i0 PRJNA638138 22552 249 0.875 2.17875 Saccostrea echinata 191078 Mollusca Mollusca 292 1.2199999999999999e-74   NTclustered gi|2628410228|ref|XM_061316054.1| 191078 g22337 i0 88.75 48.3734939759036 240 25 96 2 5 243 966 728 PREDICTED: Saccostrea echinata tropomyosin (LOC133181565), transcript variant X1, mRNA blastn 12045 292 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
14638364 14638364 PRJNA638138_P_NODE_31212_length_244_cov_0.900585_g30997_i0 PRJNA638138 31212 244 0.900585 2.1974274 Atrina pectinata 49198 Mollusca Mollusca 440 4.019999999999999e-119   NTclustered gi|435856621|ref|NC_020028.1| 49198 g30997 i0 99.18 2 244 2 100 0 1 244 15416 15173 Atrina pectinata mitochondrion, complete genome blastn 488 440 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pinnidae Atrina Atrina pectinata
18461390 18461390 PRJNA638138_P_NODE_17715_length_261_cov_1.515957_g17500_i0 PRJNA638138 17715 261 1.515957 3.95664777 Crassostrea virginica 6565 Mollusca Mollusca 187 6.2499999999999984e-43   NTclustered gi|1242739027|ref|XM_022468134.1| 6565 g17500 i0 81.498 17.3984674329502 227 42 87 0 33 259 322 96 PREDICTED: Crassostrea virginica 60S ribosomal protein L19-like (LOC111124874), mRNA blastn 4541 187 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
19006693 19006693 PRJNA638138_P_NODE_12815_length_301_cov_1.346491_g12600_i0 PRJNA638138 12815 301 1.346491 4.05293791 Metazoa 33208 Mollusca Mollusca 514 2.97e-141   NTclustered gi|1928112764|gb|MT947788.1| 6523 g12600 i0 99.644 93.3554817275748 281 1 93 0 1 281 214 494 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 28100 514 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
22286604 22286604 PRJNA638138_P_NODE_35898_length_241_cov_0.916667_g35683_i0 PRJNA638138 35898 241 0.916667 2.20916747 Atrina pectinata 49198 Mollusca Mollusca 440 3.959999999999999e-119   NTclustered gi|2337352613|gb|ON193523.1| 49198 g35683 i0 100 1.97510373443983 238 0 99 0 4 241 2336 2099 Atrina pectinata mitochondrion, complete genome blastn 476 440 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pinnidae Atrina Atrina pectinata
22286631 22286631 PRJNA638138_P_NODE_5758_length_412_cov_1.303835_g5543_i0 PRJNA638138 5758 412 1.303835 5.3718002 Pinctada imbricata 66713 Mollusca Mollusca 359 2.08e-94   NTclustered gi|321375245|gb|HQ629952.1| 66713 g5543 i0 82.555 6.16747572815534 407 71 99 0 6 412 562 156 Pinctada martensi activated C kinase 1 receptor (RACK1) mRNA, complete cds blastn 2541 359 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pteriidae Pinctada Pinctada imbricata
23561859 23561859 PRJNA638138_P_NODE_11199_length_318_cov_0.853061_g10984_i0 PRJNA638138 11199 318 0.853061 2.71273398 Ruditapes philippinarum 129788 Mollusca Mollusca 267 9.78e-67   NTclustered gi|2616655350|ref|XM_060745695.1| 129788 g10984 i0 81.962 26.5786163522013 316 56 99 1 3 318 552 238 PREDICTED: Ruditapes philippinarum ubiquitin-ribosomal protein eS31 fusion protein (LOC132754941), transcript variant X2, mRNA blastn 8452 267 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Ruditapes Ruditapes philippinarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;