RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA638138" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA638138 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5712960 5712960 PRJNA638138_P_NODE_20345_length_251_cov_0.865169_g20130_i0 PRJNA638138 20345 251 0.865169 2.17157419 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 147 1.01e-30   NTclustered gi|2874253978|emb|OY970303.1| 412054 g20130 i0 78.667 1.57768924302789 225 44 89 4 29 251 4226433 4226655 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 396 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6987916 6987916 PRJNA638138_P_NODE_26006_length_247_cov_0.885057_g25791_i0 PRJNA638138 26006 247 0.885057 2.18609079 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 241 4.44e-59   NTclustered gi|575456455|gb|CP007128.1| 861299 g25791 i0 87.619 0.963562753036437 210 23 85 3 39 247 4903903 4903696 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 238 241 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
18461515 18461515 PRJNA638138_P_NODE_28395_length_245_cov_0.895349_g28180_i0 PRJNA638138 28395 245 0.895349 2.19360505 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 339 1.5199999999999998e-88   NTclustered gi|2874253978|emb|OY970303.1| 412054 g28180 i0 92.083 29.1510204081633 240 19 98 0 6 245 1903236 1903475 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 7142 339 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;