RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA638138" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 5 ✖

bioproject 1

  • PRJNA638138 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8262506 8262506 PRJNA638138_P_NODE_15047_length_282_cov_1.239234_g14832_i0 PRJNA638138 15047 282 1.239234 3.49463988 Sonafor virus 3131557 Viruses Viruses 311 3.89e-80   NTclustered gi|2717322811|gb|PP173858.1| 3131557 g14832 i0 87.004 128.085106382979 277 35 98 1 1 276 2779 3055 MAG: Sonafor virus isolate SN1_k141_345389 genomic sequence blastn 36120 311 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sonafor virus
9538062 9538062 PRJNA638138_P_NODE_36308_length_212_cov_2.964029_g36093_i0 PRJNA638138 36308 212 2.964029 6.28374148 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 121 5.04e-23   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g36093 i0 100 4.88207547169811 65 0 59 0 14 78 71 7 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1035 121 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
12088672 12088672 PRJNA638138_P_NODE_13410_length_295_cov_2.364865_g13195_i0 PRJNA638138 13410 295 2.364865 6.97635175 Potexvirus trifolii 3433859 Viruses Viruses 438 1.8e-118   NTclustered gi|1078555000|dbj|LC190455.1| 12188 g13195 i0 93.814 14.8949152542373 291 18 99 0 5 295 627 337 White clover mosaic virus CP gene for coat protein, complete cds, isolate: Namwon blastn 4394 438 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
22286617 22286617 PRJNA638138_P_NODE_4538_length_457_cov_1.203125_g4324_i0 PRJNA638138 4538 457 1.203125 5.49828125 Galium odoratum potexvirus 2738917 Viruses Viruses 614 4.509999999999998e-171   NTclustered gi|1845309154|gb|MN814316.1| 2738917 g4324 i0 90.989 20.9824945295405 455 41 99 0 1 455 3023 3477 Galium odoratum potexvirus strain pt040-lat-5, complete genome blastn 9589 614 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Galium odoratum potexvirus
24835682 24835682 PRJNA638138_P_NODE_24220_length_248_cov_0.880000_g24005_i0 PRJNA638138 24220 248 0.88 2.1824 Potexvirus trifolii 3433859 Viruses Viruses 353 5.49e-93   NTclustered gi|1843793411|gb|MN399740.1| 12188 g24005 i0 92.339 19.9758064516129 248 19 100 0 1 248 4121 3874 White clover mosaic virus isolate Muenster_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 4954 353 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;