RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA637328" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637328 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3159934 3159934 PRJNA637328_P_NODE_16583_length_251_cov_4.024752_g16106_i0 PRJNA637328 16583 251 4.024752 10.10212752 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 250 7.52e-62   NTclustered gi|226525261|gb|FJ872372.1| 156588 g16106 i0 85.366 205.179282868526 246 31 97 5 3 245 11978 11735 Uncultured Verrucomicrobia bacterium clone 106 genomic sequence blastn 51500 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
4983402 4983402 PRJNA637328_S_NODE_3944_length_157_cov_0.975000_g3867_i0 PRJNA637328 3944 157 0.975 1.53075 Verrucomicrobiota 74201 Bacteria Bacteria 276 7.06e-70   NTclustered gi|2874254065|emb|OY970130.1| 412056 g3867 i0 98.71 174.191082802548 155 2 99 0 1 155 5154276 5154430 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 27348 276 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;