RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA637328" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637328 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1155187 1155187 PRJNA637328_S_NODE_2401_length_209_cov_1.703488_g2324_i0 PRJNA637328 2401 209 1.703488 3.56028992 Gemmata 113 Bacteria Bacteria 342 9.709999999999999e-90   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g2324 i0 96.172 115.851674641148 209 8 100 0 1 209 3635600 3635392 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 24213 342 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
13363361 13363361 PRJNA637328_S_NODE_1931_length_244_cov_1.478261_g1854_i0 PRJNA637328 1931 244 1.478261 3.60695684 Gemmata sp. SH-PL17 1630693 Bacteria Bacteria 412 8.759999999999998e-111   NTclustered gi|1015440974|gb|CP011271.1| 1630693 g1854 i0 97.131 40.844262295082 244 7 100 0 1 244 560096 559853 Gemmata sp. SH-PL17, complete genome blastn 9966 412 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. SH-PL17
14638120 14638120 PRJNA637328_S_NODE_1052_length_374_cov_2.192878_g975_i0 PRJNA637328 1052 374 2.192878 8.20136372 Frigoriglobus tundricola 2774151 Bacteria Bacteria 595 1.3099999999999996e-165   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g975 i0 95.676 604.545454545455 370 16 99 0 1 370 4959490 4959859 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 226100 595 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola
15183599 15183599 PRJNA637328_S_NODE_1432_length_303_cov_2.101504_g1355_i0 PRJNA637328 1432 303 2.101504 6.36755712 Gemmataceae 1914233 Bacteria Bacteria 433 8.63e-117   NTclustered gi|1727537522|gb|CP042911.1| 114 g1355 i0 92.409 100.580858085809 303 23 100 0 1 303 1036166 1036468 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 30476 433 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
15183609 15183609 PRJNA637328_S_NODE_3552_length_166_cov_1.186047_g3475_i0 PRJNA637328 3552 166 1.186047 1.96883802 Gemmataceae 1914233 Bacteria Bacteria 279 5.86e-71   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g3475 i0 96.988 91.1024096385542 166 5 100 0 1 166 3633871 3633706 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 15123 279 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
16457876 16457876 PRJNA637328_S_NODE_2653_length_197_cov_1.375000_g2576_i0 PRJNA637328 2653 197 1.375 2.70875 Gemmata 113 Bacteria Bacteria 309 9.17e-80   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g2576 i0 94.924 207.832487309645 197 10 100 0 1 197 3633974 3634170 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 40943 309 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;