RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3159809 3159809 PRJNA637219_S_NODE_83_length_1075_cov_22.948343_g65_i0 PRJNA637219 83 1075 22.948343 246.69468725 Brachionus rubens 392764 Rotifera other_Eukaryota 409 5.63e-109   NTclustered gi|632795126|gb|KJ489417.1| 392764 g65 i0 74.851 20.9153488372093 1006 201 91 47 100 1075 10160 11143 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 22484 409 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
4436565 4436565 PRJNA637219_S_NODE_6144_length_204_cov_1.612903_g6099_i0 PRJNA637219 6144 204 1.612903 3.29032212 Brachionus angularis 396692 Rotifera other_Eukaryota 156 1.32e-33   NTclustered gi|1999716433|gb|MT875425.1| 396692 g6099 i0 80.788 3.4656862745098 203 35 99 4 1 201 417 217 Brachionus angularis chromosome I mitochondrion, complete sequence blastn 707 156 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
9537220 9537220 PRJNA637219_S_NODE_11088_length_167_cov_0.864407_g11043_i0 PRJNA637219 11088 167 0.864407 1.44355969 Brachionus koreanus 1199090 Rotifera other_Eukaryota 150 4.83e-32   NTclustered gi|477541870|gb|KC603851.1| 1199090 g11043 i0 83.432 9.64670658682635 169 20 99 7 1 166 10134 9971 Brachionus sp. 'koreanus' chromosome I mitochondrion, complete sequence blastn 1611 150 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
17186780 17186780 PRJNA637219_S_NODE_34_length_1471_cov_2.804501_g24_i0 PRJNA637219 34 1471 2.804501 41.25420971 Cephalodella gracilis 2961693 Rotifera other_Eukaryota 1221 0   NTclustered gi|2273760299|gb|ON898536.1| 2961693 g24 i0 95.773 46.5098572399728 757 32 51 0 3 759 3 759 Cephalodella gracilis voucher NIBRGR0000649742 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 68416 1221 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella gracilis
18460786 18460786 PRJNA637219_S_NODE_10035_length_170_cov_1.082645_g9990_i0 PRJNA637219 10035 170 1.082645 1.8404965 Brachionus patulus 160652 Rotifera other_Eukaryota 159 8.139999999999998e-35   NTclustered gi|14276851|gb|AF325132.1|AF325132 160652 g9990 i0 84.431 3.81176470588235 167 20 96 6 8 170 301 465 Brachionus patulus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 648 159 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
23561433 23561433 PRJNA637219_S_NODE_3119_length_265_cov_1.643519_g3074_i0 PRJNA637219 3119 265 1.643519 4.35532535 Brachionus rubens 392764 Rotifera other_Eukaryota 226 1.3499999999999998e-54   NTclustered gi|632795131|gb|KJ489418.1| 392764 g3074 i0 85.135 6.32452830188679 222 31 83 2 19 239 6039 6259 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 1676 226 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
23561436 23561436 PRJNA637219_S_NODE_339_length_634_cov_24.381197_g299_i0 PRJNA637219 339 634 24.381197 154.57678898 Brachionus manjavacas 667381 Rotifera other_Eukaryota 462 2.4499999999999997e-125   NTclustered gi|2006240385|gb|MW559988.1| 667381 g299 i0 83.302 63.7066246056782 527 63 82 24 65 583 10469 9960 Brachionus manjavacas isolate DE chromosome I mitochondrion, complete sequence blastn 40390 462 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus manjavacas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;