RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13362976 13362976 PRJNA637219_S_NODE_16891_length_161_cov_0.910714_g16846_i0 PRJNA637219 16891 161 0.910714 1.46624954 Stieleria bergensis 2528025 Bacteria Bacteria 110 7.83e-20   NTclustered gi|1712514661|gb|CP036272.1| 2528025 g16846 i0 84.685 0.68944099378882 111 15 68 2 1 110 3800779 3800670 Planctomycetes bacterium SV_7m_r chromosome blastn 111 110 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Stieleria Stieleria bergensis
23561293 23561293 PRJNA637219_S_NODE_10119_length_169_cov_2.116667_g10074_i0 PRJNA637219 10119 169 2.116667 3.57716723 Gemmata sp. SH-PL17 1630693 Bacteria Bacteria 58.4 3.03e-4   NTclustered gi|1015440974|gb|CP011271.1| 1630693 g10074 i0 100 0.183431952662722 31 0 18 0 43 73 1386301 1386331 Gemmata sp. SH-PL17, complete genome blastn 31 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. SH-PL17
24835063 24835063 PRJNA637219_S_NODE_13200_length_165_cov_0.879310_g13155_i0 PRJNA637219 13200 165 0.87931 1.4508615 Anatilimnocola aggregata 2528021 Bacteria Bacteria 246 5.9e-61   NTclustered gi|1712591889|gb|CP036274.1| 2528021 g13155 i0 93.413 188.339393939394 167 9 100 2 1 165 7629402 7629236 Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome blastn 31076 246 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Anatilimnocola Anatilimnocola aggregata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;