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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA637219 · 26 ✖

analysis 1

  • blastn · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885005 1885005 PRJNA637219_S_NODE_17702_length_156_cov_212.186916_g17657_i0 PRJNA637219 17702 156 212.186916 331.01158896 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 289 9e-74   NTclustered gi|53693101|gb|AY742752.1| 123356 g17657 i0 100 100.025641025641 156 0 100 0 1 156 1450 1295 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 15604 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
3159799 3159799 PRJNA637219_S_NODE_6883_length_195_cov_67.041096_g6838_i0 PRJNA637219 6883 195 67.041096 130.7301372 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 361 2.46e-95   NTclustered gi|158519323|gb|EU054883.1| 162125 g6838 i0 100 100.046153846154 195 0 100 0 1 195 785 979 Hyaloperonospora brassicae strain HV2128 (WU) large subunit ribosomal RNA gene, partial sequence blastn 19509 361 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
4436544 4436544 PRJNA637219_S_NODE_3724_length_246_cov_71.974619_g3679_i0 PRJNA637219 3724 246 71.974619 177.05756274 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 455 1.4500000000000002e-123   NTclustered gi|33520229|gb|AY273974.1| 162125 g3679 i0 100 100.451219512195 246 0 100 0 1 246 459 704 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 24711 455 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
5712503 5712503 PRJNA637219_S_NODE_705_length_491_cov_101.669683_g660_i0 PRJNA637219 705 491 101.669683 499.19814353 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 891 0   NTclustered gi|158519262|gb|EU054822.1| 162125 g660 i0 99.389 99.806517311609 491 3 100 0 1 491 253 743 Hyaloperonospora brassicae strain MG1868 (TUB 12265) large subunit ribosomal RNA gene, partial sequence blastn 49005 891 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
6987346 6987346 PRJNA637219_S_NODE_266_length_688_cov_88.450704_g229_i0 PRJNA637219 266 688 88.450704 608.54084352 Peronospora alpicola 230426 SAR_Eukaryotes SAR_Eukaryotes 1018 0   NTclustered gi|1663822460|gb|MH730832.1| 230426 g229 i0 93.343 95.3241279069767 691 42 100 3 1 688 821 132 Peronospora alpicola voucher F0514 28S ribosomal RNA gene, partial sequence blastn 65583 1018 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora alpicola
8261896 8261896 PRJNA637219_S_NODE_1007_length_424_cov_35.202667_g962_i0 PRJNA637219 1007 424 35.202667 149.25930808 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 678 0   NTclustered gi|2440150|emb|X75631.1| 4788 g962 i0 96.145 70.1462264150943 415 16 98 0 10 424 3708 3294 P.megasperma gene for 28S ribosomal RNA blastn 29742 678 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
9537341 9537341 PRJNA637219_S_NODE_1808_length_332_cov_2.045936_g1763_i0 PRJNA637219 1808 332 2.045936 6.79250752 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 243 1.73e-59   NTclustered gi|166052859|emb|CU367305.1| 100861 g1763 i0 79.819 18.3192771084337 332 67 100 0 1 332 548 879 Aphanomyces euteiches cDNA blastn 6082 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9537360 9537360 PRJNA637219_S_NODE_4088_length_237_cov_40.276596_g4043_i0 PRJNA637219 4088 237 40.276596 95.45553252 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 279 8.96e-71   NTclustered gi|695467755|ref|XM_009541406.1| 67593 g4043 i0 87.967 98.337552742616 241 23 100 4 1 237 867 629 Phytophthora sojae hypothetical protein mRNA blastn 23306 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10083551 10083551 PRJNA637219_S_NODE_1668_length_344_cov_66.379661_g1623_i0 PRJNA637219 1668 344 66.379661 228.34603384 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 564 3.379999999999999e-156   NTclustered gi|189084007|gb|BT031523.1| 4784 g1623 i0 98.142 93.6337209302326 323 6 94 0 1 323 1832 2154 Phytophthora capsici clone CBOT29-E20 mRNA sequence blastn 32210 569 0.991212653778559 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
10813033 10813033 PRJNA637219_S_NODE_17489_length_159_cov_56.700000_g17444_i0 PRJNA637219 17489 159 56.7 90.153 uncultured Hyaloperonospora 660915 SAR_Eukaryotes SAR_Eukaryotes 294 1.98e-75   NTclustered gi|254658402|gb|FJ537328.1| 660915 g17444 i0 100 100 159 0 100 0 1 159 979 1137 Uncultured Hyaloperonospora clone Biosope_T41.118 18S ribosomal RNA gene, partial sequence blastn 15900 294 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora uncultured Hyaloperonospora
10813035 10813035 PRJNA637219_S_NODE_18169_length_150_cov_83.346535_g18124_i0 PRJNA637219 18169 150 83.346535 125.0198025 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 278 1.85e-70   NTclustered gi|53693101|gb|AY742752.1| 123356 g18124 i0 100 100 150 0 100 0 1 150 550 401 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 15000 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
12634091 12634091 PRJNA637219_S_NODE_10310_length_168_cov_1.521008_g10265_i0 PRJNA637219 10310 168 1.521008 2.55529344 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 305 9.81e-79   NTclustered gi|689595168|gb|KM068790.1| 468623 g10265 i0 99.405 99.9702380952381 168 1 100 0 1 168 228 61 Albugo lepidii isolate CA-A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16795 305 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo lepidii
13363012 13363012 PRJNA637219_S_NODE_471_length_565_cov_1.649225_g428_i0 PRJNA637219 471 565 1.649225 9.31812125 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 470 1.3e-127   NTclustered gi|669151349|ref|XM_008613015.1| 1156394 g428 i0 83.237 78.6902654867257 519 79 91 6 51 565 734 1248 Saprolegnia diclina VS20 adenosylhomocysteinase mRNA blastn 44460 470 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
13909007 13909007 PRJNA637219_S_NODE_1971_length_321_cov_1.985294_g1926_i0 PRJNA637219 1971 321 1.985294 6.37279374 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 593 3.9899999999999986e-165   NTclustered gi|158346487|gb|EU049225.1| 162125 g1926 i0 100 100.102803738318 321 0 100 0 1 321 254 574 Hyaloperonospora brassicae voucher HV2128 (WU) internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 32133 593 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
14637801 14637801 PRJNA637219_S_NODE_832_length_461_cov_3.662621_g787_i0 PRJNA637219 832 461 3.662621 16.88468281 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 268 4.08e-67   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g787 i0 83.505 56.0368763557484 291 45 63 3 127 416 527 239 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 25833 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
15911724 15911724 PRJNA637219_S_NODE_9153_length_176_cov_1.055118_g9108_i0 PRJNA637219 9153 176 1.055118 1.85700768 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 281 1.74e-71   NTclustered gi|325195057|emb|FR825852.1| 890382 g9108 i0 95.48 91.5 177 7 100 1 1 176 360 184 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 16104 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16457753 16457753 PRJNA637219_S_NODE_12173_length_166_cov_0.871795_g12128_i0 PRJNA637219 12173 166 0.871795 1.4471797 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 167 4.76e-37   NTclustered gi|23394405|gb|AF424666.1| 4787 g12128 i0 85.185 1.95180722891566 162 24 98 0 5 166 848 1009 Phytophthora infestans clone MY-11-G-02 unknown mRNA blastn 324 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
16457787 16457787 PRJNA637219_S_NODE_7493_length_189_cov_16.142857_g7448_i0 PRJNA637219 7493 189 16.142857 30.50999973 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 350 5.14e-92   NTclustered gi|2440150|emb|X75631.1| 4788 g7448 i0 100 100.571428571429 189 0 100 0 1 189 2927 3115 P.megasperma gene for 28S ribosomal RNA blastn 19008 350 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
18460823 18460823 PRJNA637219_S_NODE_1195_length_395_cov_1.841040_g1150_i0 PRJNA637219 1195 395 1.84104 7.272108 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 665 0   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g1150 i0 96.977 101.212658227848 397 10 100 2 1 395 2288 1892 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 39979 665 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
18460932 18460932 PRJNA637219_S_NODE_3155_length_264_cov_1.358140_g3110_i0 PRJNA637219 3155 264 1.35814 3.5854896 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 113 1.09e-20   NTclustered gi|695467825|ref|XM_009541424.1| 67593 g3110 i0 87.255 18.0378787878788 102 10 38 3 165 264 313 413 Phytophthora sojae hypothetical protein mRNA blastn 4762 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
21556953 21556953 PRJNA637219_S_NODE_1617_length_348_cov_99.270903_g1572_i0 PRJNA637219 1617 348 99.270903 345.46274244 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 643 4.279999999999998e-180   NTclustered gi|53693101|gb|AY742752.1| 123356 g1572 i0 100 100.747126436782 348 0 100 0 1 348 24 371 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 35060 643 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
21556961 21556961 PRJNA637219_S_NODE_2757_length_279_cov_2.486957_g2712_i0 PRJNA637219 2757 279 2.486957 6.93861003 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 494 3.55e-135   NTclustered gi|2314988977|ref|NC_067074.1| 78237 g2712 i0 98.566 99.9964157706093 279 4 100 0 1 279 37484 37206 Phytophthora gonapodyides voucher P7050 mitochondrion, complete genome blastn 27899 494 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora gonapodyides
22285827 22285827 PRJNA637219_S_NODE_1338_length_377_cov_121.134146_g1293_i0 PRJNA637219 1338 377 121.134146 456.67573042 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 669 0   NTclustered gi|53693101|gb|AY742752.1| 123356 g1293 i0 98.674 100.705570291777 377 5 100 0 1 377 588 964 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 37966 669 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
22832461 22832461 PRJNA637219_S_NODE_1898_length_325_cov_173.547101_g1853_i0 PRJNA637219 1898 325 173.547101 564.02807825 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 577 4.069999999999999e-160   NTclustered gi|158519366|gb|EU054926.1| 123356 g1853 i0 98.765 92.3876923076923 324 4 99 0 2 325 335 12 Hyaloperonospora parasitica strain GG156 (MA) large subunit ribosomal RNA gene, partial sequence blastn 30026 577 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
23561444 23561444 PRJNA637219_S_NODE_4079_length_238_cov_1.169312_g4034_i0 PRJNA637219 4079 238 1.169312 2.78296256 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 226 1.1899999999999999e-54   NTclustered gi|675185100|ref|XM_008903187.1| 761204 g4034 i0 84.889 90.4327731092437 225 32 94 2 7 230 1506 1283 Phytophthora parasitica INRA-310 luminal-binding protein mRNA blastn 21523 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
25381409 25381409 PRJNA637219_S_NODE_11460_length_166_cov_1.128205_g11415_i0 PRJNA637219 11460 166 1.128205 1.8728203 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 110 8.13e-20   NTclustered gi|156986979|gb|EU080348.1| 445398 g11415 i0 85.577 63.0481927710843 104 15 63 0 12 115 353 456 Phytophthora sulawesiensis isolate PD_01297(P6306) heat shock protein 90 (HSP90) gene, partial cds blastn 10466 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sulawesiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;