RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1155096 1155096 PRJNA637219_S_NODE_14361_length_163_cov_1.789474_g14316_i0 PRJNA637219 14361 163 1.789474 2.91684262 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|1694443677|ref|NG_065498.1| 4841 g14316 i0 100 100 163 0 100 0 1 163 1418 1256 Mucor racemosus NRRL 3640 18S rRNA gene, partial sequence; from TYPE material blastn 16300 302 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
1155111 1155111 PRJNA637219_S_NODE_6601_length_199_cov_1.326667_g6556_i0 PRJNA637219 6601 199 1.326667 2.64006733 Fungi 4751 Fungi Fungi 119 1.68e-22   NTclustered gi|2837715318|ref|XM_069385123.1| 4840 g6556 i0 81.633 28.286432160804 147 23 73 4 1 145 554 698 Rhizomucor pusillus uncharacterized protein (VTP01DRAFT_6243), partial mRNA blastn 5629 119 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Rhizomucor Rhizomucor pusillus
1885007 1885007 PRJNA637219_S_NODE_1842_length_330_cov_1.562278_g1797_i0 PRJNA637219 1842 330 1.562278 5.1555174 Rhizopus microsporus 58291 Fungi Fungi 244 4.78e-60   NTclustered gi|1331189772|ref|XM_023607192.1| 1340429 g1797 i0 87.923 49.0757575757576 207 25 63 0 1 207 205 411 Rhizopus microsporus ATCC 52813 uncharacterized protein (RHIMIDRAFT_211203), mRNA blastn 16195 244 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus microsporus
1885062 1885062 PRJNA637219_S_NODE_8242_length_183_cov_1.141791_g8197_i0 PRJNA637219 8242 183 1.141791 2.08947753 Lichtheimia ornata 688661 Fungi Fungi 171 4.1199999999999997e-38   NTclustered gi|2553594699|ref|XM_058489316.1| 688661 g8197 i0 91.803 40.5409836065574 122 10 67 0 55 176 16 137 Lichtheimia ornata heat shock protein HSS1 (O0I10_009322), partial mRNA blastn 7419 171 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
3706694 3706694 PRJNA637219_S_NODE_4583_length_227_cov_1.432584_g4538_i0 PRJNA637219 4583 227 1.432584 3.25196568 Mucor 4830 Fungi Fungi 420 4.81e-113   NTclustered gi|539191428|gb|KF411377.1| 36080 g4538 i0 100 100 227 0 100 0 1 227 352 126 Mucor circinelloides f. circinelloides isolate DGGE gel band F-3 18S ribosomal RNA gene, partial sequence blastn 22700 420 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor circinelloides
4436549 4436549 PRJNA637219_S_NODE_4584_length_227_cov_1.432584_g4539_i0 PRJNA637219 4584 227 1.432584 3.25196568 Radiomyces spectabilis 64574 Fungi Fungi 150 6.969999999999999e-32   NTclustered gi|2323738717|ref|XM_051563370.1| 64574 g4539 i0 80.788 0.894273127753304 203 29 87 9 6 203 916 1113 Radiomyces spectabilis isocitrate dehydrogenase, NAD-dependent (BYT42DRAFT_395654), mRNA blastn 203 150 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
24107015 24107015 PRJNA637219_S_NODE_2959_length_271_cov_1.608108_g2914_i0 PRJNA637219 2959 271 1.608108 4.35797268 Mucor 4830 Fungi Fungi 501 2.05e-137   NTclustered gi|1852614241|gb|MT603965.1| 36080 g2914 i0 100 96.6273062730627 271 0 100 0 1 271 576 846 Mucor circinelloides strain CMRC 586 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26186 501 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor circinelloides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;