RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13909021 13909021 PRJNA637219_S_NODE_5931_length_207_cov_0.848101_g5886_i0 PRJNA637219 5931 207 0.848101 1.75556907 root 1 Root_unresolved Root_unresolved 58.4 3.89e-4   NTclustered gi|2917940756|emb|OZ237571.1| 6108 g5886 i0 97.143 26.6086956521739 35 0 16 1 42 75 12202024 12202058 Anemonia sulcata genome assembly, chromosome: 17 blastn 5508 58.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
24107012 24107012 PRJNA637219_S_NODE_1979_length_320_cov_3.667897_g1934_i0 PRJNA637219 1979 320 3.667897 11.7372704 Coronatae 86058 Cnidaria other_Eukaryota 91.6 6.36e-14   NTclustered gi|15208481|gb|AY026368.1| 86043 g1934 i0 90 0.4375 70 7 22 0 251 320 1469 1400 Atolla vanhoeffeni 28S large subunit ribosomal RNA gene, partial sequence blastn 140 91.6 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Coronatae Atollidae Atolla Atolla vanhoeffeni
25381425 25381425 PRJNA637219_S_NODE_5240_length_216_cov_1.574850_g5195_i0 PRJNA637219 5240 216 1.57485 3.401676 Metazoa 33208 Cnidaria other_Eukaryota 52.8 0.019   NTclustered gi|2917940693|emb|OZ237556.1| 6108 g5195 i0 100 0.958333333333333 28 0 13 0 1 28 12164345 12164372 Anemonia sulcata genome assembly, chromosome: 2 blastn 207 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;